Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq523 320 3e-82 seq2277 181 2e-40 >seq523 Length=17530 Score = 320 bits (354), Expect = 3e-82 Identities = 1034/1574 (66%), Gaps = 61/1574 (4%) Strand=Plus/Plus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATA 212753 |||||||| ||||| |||||| ||| | || | | ||| ||||||||| || | Sbjct 570 AGGTTCAGCGACTGGGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGC 629 Query 212754 TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCG 212813 | | ||| | || |||||||||||| | ||| || |||||||| || |||| || | Sbjct 630 TTGCGCTGCGGGATCTCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCCGGGATGCTG 689 Query 212814 GGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAG 212873 ||| || | || || || ||| | | | || ||||| ||||||||| Sbjct 690 TCGATCGTCAGGACGGAGCCGTTGTAGGAGATGATCTCATTCCGCATCGTCTCGTTCCAC 749 Query 212874 AGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAG 212933 || || | | ||| | | || |||| ||| || | | |||| || || Sbjct 750 AGCCCGCGCTTGATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCACTC 809 Query 212934 AGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGA 212993 ||||| | | ||| | ||| || ||| | ||||||| || ||||||||| || || Sbjct 810 AGCACACGGCGGACGTAGATGTTCGAGGTGAATGGCTCGAAGCACTCGTTGTTGCCGAGG 869 Query 212994 ATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGC 213053 ||||| | || || |||||||| || || | |||||| ||| | || ||| | Sbjct 870 ATCTGCGACGTCGACGCGGTGGGCATCGGGGCGAGCAGGAGGGAGTTGCGCAGGCCGACC 929 Query 213054 TCGCCGA--TGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCA--GACAGGTCCTCGTC 213109 | | | | || | | ||| | |||||||||| | || | ||| | | Sbjct 930 TGAACCACCTTCTGCTTC-AGGCTGT-CCCAGTCCCAGCGACCGCTGTTAGGACGCGGG- 986 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 ||| |||||||||||||||||||||||||| | |||| | || ||||||| | | | Sbjct 987 -TTC---TTCCACATGTCAAACTGCAAGATGCCCTGGCTCGCCGGACTGCCCTTGAAGGT 1042 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||| ||||| | |||||| |||| ||| ||||||| || || || ||||||| Sbjct 1043 CTCGTAAGGGCCTTCCTCCTTCGCCAACTCCATCGACGCCTCCACCGCGGCAAAGTAGAT 1102 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGG--GACGTGAAGGGCATCATC 213287 || || || |||||| || | | || ||||| | |||| ||||||| | Sbjct 1103 CGTCTCGAAGATCTCCGCATTCACCCGCTGCGCCTCGGCACTGACG--AAGGGCAGACGC 1160 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 | | ||| |||| ||||| ||||| || |||| ||| | || | || | || | Sbjct 1161 AGTAGAATGAAGGCATCCGCCAGGCCCTGCACACCGAGGCCCACCGGGCGGTTGCGCATG 1220 Query 213348 TTAGACTTGGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT 213406 || | || || | ||||| ||||| |||||| ||| |||| | ||| ||||| Sbjct 1221 TT-GCTGCGGCGCGCCGTCTCCACCGGGTAGTAGTTGCGGTCAATGACCCGGTTCAGGTT 1279 Query 213407 GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTC 213466 ||||||| | || ||||| | ||| || ||||| | | || | | || Sbjct 1280 GCGGGTGATCTGCTTCGTGACGCTGTACAGCAGCTGGTGATCCACCTCGCGCTTCTCCTC 1339 Query 213467 CTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGC---CACCTCCTGAGA 213523 | ||| || |||||||||||| ||| |||||||| ||||| | ||||| | || Sbjct 1340 GTTCACGAAGCGCGGCAGGGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGA 1399 Query 213524 GTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTG 213583 |||||||| | ||| || ||||||||||| ||| ||| ||||| ||||||| Sbjct 1400 ---CGTGTACTCGACGATTTCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTT 1456 Query 213584 GTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAG 213643 ||||| ||||| |||| | |||||||| || ||| | ||| |||||||| | Sbjct 1457 CTGGTTCGACTTGCTGTTGCACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGAT 1516 Query 213644 CTGGGACACCAGTATCTGGC--TCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGC 213700 ||| ||| | || | |||| ||| | | |||| |||| || || ||| || Sbjct 1517 CTGCGACTCGAGGA--TGGCAAACCACACCT-CCTGCGCCTGGA----TCGTCTGCACGC 1569 Query 213701 TCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCC---CCAGACCC 213756 ||| | | |||||||||| ||||| || | ||| || | ||| ||| | | Sbjct 1570 CGCGGCCCTCTGCCTCGTACTTCTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCAC 1629 Query 213757 TGTCCAGTCCCGGACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTC-ATCTCTGAC 213814 | ||| ||||| || | |||| | ||| || |||| | ||| || ||| | || Sbjct 1630 T---CAGCCCCGGGCACGCGCTCGGGTC-CATCAGCGTCCACTTCCCCTCGCTCT-TCAC 1684 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 || || ||||||||||||||||| |||||||||| ||| ||||| | | | | || Sbjct 1685 TCGCTTCATGAACAGGTCCGGGATCCACAGCGCGTAGAAGAGGTCACGCGCGCGCTGGTC 1744 Query 213875 GTCCACTCCAGAGTTTTTGCG---CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGG 213931 |||| || | | ||||| ||| |||||| | |||||||| || |||||||| Sbjct 1745 GTCCTTGCC---GGTGTTGCGCTTCAGCAGCAGAAAGCCGAAGATGTCGGCATGCCACGG 1801 Query 213932 CTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGC 213988 ||||| ||||||||| ||||| ||| | ||| ||||||||||||||| | ||| Sbjct 1802 CTCCAGGTAGATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTGGTCCACGTAACGGGC 1861 Query 213989 CACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGC 214048 ||||||| | ||||| | || |||| ||||||||| ||||| || || || Sbjct 1862 AGTGTTGTTGAACACACGCAGCATCGGCACCAAGCCGTTGGACGTCCCGTTCGTGCCGGC 1921 Query 214049 TATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTT 214108 || || ||||| || | | |||| | | || || ||||| || || ||| Sbjct 1922 GATGTAGCTGCCGGCGGAGCGGATGTTGTGGACGTGCAGGCCGATGCCGCCCGCCGCCTT 1981 Query 214109 GGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCAT-CTGTGA 214167 | ||| | |||||| | ||| || || ||||||| | |||||||| | || ||| Sbjct 1982 GCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTTGA 2041 Query 214168 GGTTCAGCAAGAAGCAGCTCGAG---AGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCG 214224 | | |||| | ||| |||| | ||| ||| | | || ||| | |||||| || | Sbjct 2042 AG--CGACAAG--GAAGCACGAGCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGG 2097 Query 214225 TGGGGCTGGCATGG 214238 | ||| |||| ||| Sbjct 2098 TCGGGGTGGCGTGG 2111 >seq2277 Length=2457 Score = 181 bits (200), Expect = 2e-40 Identities = 566/859 (66%), Gaps = 23/859 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| |||| Sbjct 532 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 591 Query 47899 CATGAAGAGGAAGGGGTTGGGT---GTGTTATACACCCGTGTC-AGGCCCATCTGTTCCA 47954 ||||||| ||| || | | || ||| || | | || || |||| | | | Sbjct 592 CATGAAGTCGAACGGCT-GCGTCACGTGGTAGTG---CTTCTCCAGCCCCAGCGACACAA 647 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 |||| | ||||| ||| |||||||||| | ||||| || ||||||||| || | Sbjct 648 GCAGCCGGTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCA 707 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | ||| |||| || | || ||||| ||| || | ||| || ||| | | | Sbjct 708 GCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGA 767 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGC---AGGTGCTTGGCATAGAGCATGC 48131 ||| | ||||| ||| || ||| || | |||| | || |||| || Sbjct 768 TCTCCAGCACGCG---CTCGCGCGGCAGCTTGTGCTTGATGTGCGCGTTGTACAGCAGGC 824 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | || |||||| |||||| ||| ||||| || ||| ||| ||||| ||| || | Sbjct 825 ACGCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCC 884 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||| | ||| | || || |||||||| | || ||| || || |||||||||| Sbjct 885 CCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAAGA 944 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 |||||||||| || |||||| || | |||| ||| | | ||| || | || || Sbjct 945 TGCCCTCCACCGCGGCGAACCCGATCAGCCGCTC-CTGGAAG-CTCGCGCCGCTC-CCGA 1001 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| | |||||| || |||||||||| |||||| || ||||||| || || | | Sbjct 1002 TCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGCGTGCA 1061 Query 48372 AGAGCTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 ||| | || || ||| || ||||| | || || |||||| | |||| | Sbjct 1062 GCAGCCGC-AGC-TTCTCCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGT 1119 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || | ||||||||||||||| || | ||||| ||| Sbjct 1120 CTCCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCAC 1179 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 || ||| || ||| | |||| || ||||| | || ||||| || | || Sbjct 1180 CTTCACGTCGCCCATGAACCGCTCCGCAAGGTTCTCGATCACGATCCCGTCGCTGCCGGC 1239 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 ||||| || || || || || | ||| || ||||| || | | || |||| | Sbjct 1240 GAAGAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCTTCACCCAGTC 1299 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGA-CGCGAGTGCTTTTT 48668 | | ||| ||||||||||| | || |||| ||||||| | | | | ||| | | Sbjct 1300 GCGCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGC-TCCT 1358 Query 48669 TGTACATGCCCCATATGTC 48687 ||||| ||| ||| ||||| Sbjct 1359 TGTACTTGCGCCAGATGTC 1377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931472262012160