Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2277 165 2e-35 seq523 138 2e-27 >seq2277 Length=2457 Score = 165 bits (182), Expect = 2e-35 Identities = 533/812 (66%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || |||| ||| |||||| || |||| | ||| | | | | |||| Sbjct 1329 GAGGAGATCGACCTGGGCAACGACATGCGCGACTGGGTGAAGCTGAA--CGACGGGGAGC 1272 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| |||| ||||| || | | || || || |||| ||||| Sbjct 1271 GGCACTTCATCAAGCACGTGCTGGCGTTCTTCGCCGGCAGCGACGGGATCGTGATCGAGA 1212 Query 25640 ATCTGTGCG-AGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || |||| || | |||| | || ||| || |||||| | | ||| |||||| Sbjct 1211 ACCT-TGCGGAGCGGTTCATGGGCGACGTGAAGGTGCCGGAGGCGCGCGCGTT-CTACGG 1154 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| || || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 1153 GTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTA 1094 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| || | |||||| | || ||| || || || ||| Sbjct 1093 CATCACGGACAGCGAGGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCA 1035 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || ||| ||||||| |||||| || ||||||| ||| |||| | || | Sbjct 1034 TCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGGGAGCG---GCGCGAGCTTCCAGG 978 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||||||| | | || || || |||||||||||||| ||| ||| ||||| ||| || Sbjct 977 AGCGGCTGATCGGGTTCGCCGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGC-GCG 919 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| || ||||||||| ||| Sbjct 918 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATC 859 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || || || |||||||| |||| | ||| | Sbjct 858 TCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACGCGCACATCAAG 799 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | | | ||| ||| || || |||||| || || ||| | |||||| Sbjct 798 CACAAGCTGCCGCGCGAGCGCGTGCTGGAG-ATCATCGTGGACGCGGTGAACATCGAGCG 740 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA-CTCATGA 26173 ||||| | ||||||||| | || || ||| Sbjct 739 CGAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAAC-GCGGAGCTGATGT 681 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || ||||| |||| ||||| |||| |||| |||| | |||||| || | | | | Sbjct 680 CGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTGTC-GCTGGGGCTGGAGAAGCAC 622 Query 26233 TAC--AGT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 ||| || |||| | ||||||||||| ||||| | || ||| || | || ||||| Sbjct 621 TACCACGTGACGC---AGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACG 565 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||||||||| || || Sbjct 564 AACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 533 >seq523 Length=17530 Score = 138 bits (152), Expect = 2e-27 Identities = 516/798 (65%), Gaps = 11/798 (1%) Strand=Plus/Plus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||| | | ||| ||||| |||||||| ||| ||| || |||| | ||| Sbjct 1356 AGGGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACGATT 1415 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 || || || ||||| ||||||||| || || |||| || || || ||||||| ||| Sbjct 1416 TCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTG 1475 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 ||||||||||| || || || || |||| ||||| | ||| | | | || || Sbjct 1476 CACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGGCA 1535 Query 221882 TCCCAGAGTTCTCTGGCGCTC-ACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCC 221940 ||| | || ||| || | |||| | | | ||||| | || | | | | Sbjct 1536 AACCACACCTC-CTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCTGCCTCGTACTTCTC 1594 Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG-CGG 221999 | || || || |||| || ||||| || ||| || || ||| | ||| Sbjct 1595 G---TACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGCTCGG 1651 Query 222000 GACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCC 222059 | | |||||| |||| | | | | || || | || |||||| ||||||||||||| Sbjct 1652 GTC-CATCAGCGTCCACTTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGATCC 1710 Query 222060 ACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGAT 222119 ||||||| | ||||| || | | ||||| || ||| |||| |||| | |||| Sbjct 1711 ACAGCGCGTAGAAGAGGTCACGCGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCA 1770 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 || ||| | || ||||| || |||||||||||||| |||| ||| | || || | Sbjct 1771 GCAGAAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGC 1830 Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238 |||| ||| ||||| |||| | | ||| | |||||| | || || |||| Sbjct 1831 GCTTACCGCCGCCCTGGTCCA-CGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGC 1889 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298 |||| |||||||| ||||| ||||| ||||| ||| ||| | | ||| Sbjct 1890 ACCAAGCCGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTG 1949 Query 222299 CTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 | | || |||||| || || || || ||| | |||||| ||| || ||| Sbjct 1950 TGGACGTGCAGGCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTG 2009 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCC-TTGACGTTCAGCAGAAAACAAGACGACATCTG 222417 || |||||| || || ||| ||| |||| | | || || || || |||||| Sbjct 2010 TCGTAGATGCCGTCGATGCTGTCTTCCTTTGAAG-CGACAAGGAAGCACGAGCTCATCTG 2068 Query 222418 AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGA 222477 | || | | | |||||| || || || || ||||||| || ||| |||| | || Sbjct 2069 CGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCGCGA 2128 Query 222478 CATCAGATCGTACGTCTC 222495 |||||| ||||||||||| Sbjct 2129 CATCAGCTCGTACGTCTC 2146 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 221110 GTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGT 221169 || |||||||||||| |||| || || ||||| | | ||| | ||| || || Sbjct 779 GTACTTGTTCACCACCGGGAACTCGCCACTCAGCACACGGCGGACGTAGATGTTCGAGGT 838 Query 221170 GAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGG 221229 ||| || |||| || |||||||||||| |||||||| | ||| ||||||||||| || Sbjct 839 GAATGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGACGTCGACGCGGTGGGCATCGG 898 Query 221230 TGCCACCAGCAGACTGTTGCGCAGTCCGA 221258 || | ||| || ||||||||| |||| Sbjct 899 GGCGAGCAGGAGGGAGTTGCGCAGGCCGA 927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928784436698560