Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq523 114 2e-20 seq2277 82.4 9e-11 >seq523 Length=17530 Score = 114 bits (126), Expect = 2e-20 Identities = 549/856 (64%), Gaps = 25/856 (3%) Strand=Plus/Minus Query 75224 TTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATAC 75283 ||| |||| || || ||||||||||| | | ||| | | ||| ||||| ||| Sbjct 2197 TTCCTGCGTGTTGCCATCGGCATCCATGTTGGTGACCTCAAGAATGTGCGCGAGACGTAC 2138 Query 75284 GACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACA 75343 || |||||| | || | |||| ||||| || || ||||||||||| || || || Sbjct 2137 GAGCTGATGTCGCGCGGCTTCTTCACCCACGCCACCCCGACCCTCTTCAACGCCGGCACG 2078 Query 75344 CCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGT 75403 || | ||||||||| | ||||||||| |||| ||||| ||| ||| |||| Sbjct 2077 CCGAAGCCGCAGATGAGCTCGTGCTTCCTTGTCGCTTCAAAGGAAGACAGCATCGACGGC 2018 Query 75404 ATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATG 75463 ||||| | || || | |||||| || ||| ||| ||| || || || || || Sbjct 2017 ATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGCGGGCGGCATCGGCCTG 1958 Query 75464 CACATCCATGATGTGAGAGCC-AATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGA 75522 ||| |||| | | | || | || || || || || || || | Sbjct 1957 CACGTCCACAACATCCGCTCCGCCGGCAGCT-ACATCGCCGGCACGAACGGGACGTCCAA 1899 Query 75523 TGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGG 75582 || | | || ||||| || || || ||| ||| || || || || | || | || Sbjct 1898 CGGCTTGGTGCCGATGCTGCGTGTGTTCAACAACACTGCCCGTTACGTGGACCAGGGCGG 1839 Query 75583 GCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGA 75639 || |||||||| || |||| ||||| |||| || ||||||||||| ||| | | Sbjct 1838 CGGTAAGCGCAAGGGTGCCTTCGCCATCTACCTGGAGCCGTGGCATGCCGACATCTTCGG 1779 Query 75640 GTTCCT-----TGAGTTACGACTCAACCAAGGTGACGAAGAG-GCTCGGTGTAGAGATCT 75693 || || ||| | || | |||| ||||| || || || | || || Sbjct 1778 CTTTCTGCTGCTGAAGCGCAACACCGGCAAG--GACGACCAGCGCGCG----CGTGACCT 1725 Query 75694 CTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAA-T 75752 ||| | | |||||||| || ||||| ||||||||||| | ||| ||| | || || | Sbjct 1724 CTTCTACGCGCTGTGGATCCCGGACCTGTTCATGAAGCGAG-TGAAGAGCGAGGGGAAGT 1666 Query 75753 GGTCTCTTTTCTGTCCAGA-CAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTT 75811 || | || | | || || | | || || || ||| || |||||||| Sbjct 1665 GGACGCTGAT-GGACCCGAGCGCGTGCCCGGGGCTGAGTGACTGCTACGGCGAGGAGTTC 1607 Query 75812 GAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC-GACTGTACCAGCCGC 75870 || ||| ||| ||||| || | ||||| | | | ||| ||| | |||| ||| Sbjct 1606 GAGCGCCTGTACGAGAAGTACGAGGCAGAGGGCCGCGGC-GTGCAGAC-GATCCAGGCGC 1549 Query 75871 -CGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTT 75929 || || ||| || || ||| | || |||| ||||| || || | || || | Sbjct 1548 AGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACCGGCGTCCCGTTCATTCTGT 1489 Query 75930 ACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAA 75989 ||||||| || || |||| ||| ||||| ||||| | || || |||||| |||| | Sbjct 1488 ACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACGATCAAGTGCTCGA 1429 Query 75990 ATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGG 76049 | || ||||||||||| | |||||||| ||| ||||| || || ||||| | | Sbjct 1428 ACCTGTGCACGGAAATCGTCGAGTACACGTCGCCGGAGGAGACCGCCGTGTGCAACCTCG 1369 Query 76050 CATCAATCGCCCTTCC 76065 | || |||||||| || Sbjct 1368 CCTCCATCGCCCTGCC 1353 >seq2277 Length=2457 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 |||||||| ||||||||||||||||| |||||||| | | ||| |||||||||| || Sbjct 954 GTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 895 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAG 65220 || ||||| || || ||| || || || || || || || ||||| || ||| | Sbjct 894 CTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 835 Query 65221 GAGTTTGC 65228 || || || Sbjct 834 GACTTCGC 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596530830433120