Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2091 273 3e-68 seq655 257 2e-63 seq497 154 2e-32 seq702 111 2e-19 >seq2091 Length=2857 Score = 273 bits (302), Expect = 3e-68 Identities = 1013/1576 (64%), Gaps = 20/1576 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || |||||||| ||| | || || || ||||| || || ||||| ||||| || || || Sbjct 426 GCCATTGGTATTGATCTGGGCACGACGTACTCGTGCGTCGGTGTGTGGCAGAACGAGCGC 485 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| ||||| || ||||| || || || |||||||| || || || Sbjct 486 GTGGAGATCATCGCGAACGACCAGGGTAACCGCACGACGCCGTCGTACGTCGCGTTCACG 545 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || || | || |||||||| || || ||| || |||||||| ||| Sbjct 546 GACTCGGAGCGCCTGATCGGCGATGCCGCGAAGAACCAGGTCGCGATGAACCCGCACAAC 605 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || || ||||||||||| || ||||| |||||||| || || || | Sbjct 606 ACGGTGTTCGACGCGAAGCGCCTGATTGGCCGCAAGTTCAACGACTCCGTTGTGCAGGCG 665 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG--GTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| || || | ||| | || ||||| |||| | Sbjct 666 GACATGAAGCACTGGCCCT-TCAAGGTGACGACGAAGGGTGAC-GACAAGCCGGTGATCA 723 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || | || ||||| ||| | || || | || || || || || |||||| Sbjct 724 CGGTGCAGTTCCACGGCGAGGAAAAGACCTTCACGCCGGAGGAGATCAGCTCCATGGTGC 783 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 || | |||||||||||||| || || | | | | || || ||||| | || || | Sbjct 784 TGCTGAAGATGAAGGAGACGGCTGAGGCGTACCTCGGCAAGCAGGTGAAGAAGGCCGTGG 843 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 |||| || ||||| ||||||| || || || || |||||||| |||||||| | | | Sbjct 844 TGACGGTGCCTGCCTACTTCAACGACTCGCAGCGTCAGGCGACGAAGGACGCCGGCACGA 903 Query 195777 TTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | || ||||| | || | || ||||| || || || || || || || || || | Sbjct 904 TCGCTGGTCTGGAGGTGCTGCGCATCATCAACGAGCCGACGGCCGCCGCCATCGCGTACG 963 Query 195837 GTCTGGACAAGAACAAGGACG---AAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 ||||||||||| | | |||| | || || || ||||||| ||||| || || | Sbjct 964 GTCTGGACAAGGGCGACGACGGCAAGGAGCGCAACGTGCTGATCTTCGATCTGGGCGGCG 1023 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 ||||||| ||||| | || || | || || || || || ||||| || ||||| || Sbjct 1024 GTACGTTCGATGTGACGCTGCTGACGATCGACGGCGGCATCTTCGAGGTGAAGGCCACCA 1083 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCT-CCGTCATTTGTCT 196012 ||||| || || || || ||||| || |||||| || || | ||| || | Sbjct 1084 ACGGTGACACCCACCTCGGCGGTGAGGACTTCGATAACCGCCTCGTGACGTTCTTCAGC- 1142 Query 196013 GATGAGTTCCGTCGAAAGAATAAG---AAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || |||||| || ||||| ||| || || | || | | | ||||| || Sbjct 1143 GAGGAGTTCAAGCGCAAGAACAAGGGCAAGGACCTGTCGTCGAGCCACCGCGCTCTGCGC 1202 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || || | || || || || || ||||| || || || || || || | || | | | Sbjct 1203 CGCCTGCGCACCGCGTGCGAGCGCGCCAAGCGCACGCTGTCGTCCGCGACGCAGGCGACG 1262 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 | ||||| || || |||| ||| | |||||| | | || || || || || || Sbjct 1263 ATCGAGATCGACGCGCTGTTCGACAACGTGGACTTCCAGGCCACGATCACGCGCGCGCGC 1322 Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || ||| | | || |||| | | || | || || || | || || Sbjct 1323 TTCGAGGAGCTGTGCGGCGACCTGTTCCGCAGCACGATCCAGCCGGTGGAGCGCGTGCTC 1382 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 | || || |||||||| ||| || | || | || || ||||| || || || Sbjct 1383 CAGGATGCGAAGATGGACAAGCGCTCCGTGCACGACGTCGTGCTGGTGGGCGGGTCCACG 1442 Query 196310 CGTATTCCGAAGATTCAACAGATGCTT---TCTAGCTTCTTCAATAATAAAGATTTAAAC 196366 ||||| |||||| | |||| ||| || ||||||| || || | ||| Sbjct 1443 CGTATCCCGAAGGT---GCAGAGCCTTGTGTCCGACTTCTTCGGCGGCAAGGAGCTGAAC 1499 Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426 || | |||||||| || || || || || || || || || || ||||| || || Sbjct 1500 AAGAGCATCAACCCCGACGAGGCCGTGGCGTACGGCGCTGCGGTGCAGGCGTTCATCCTG 1559 Query 196427 TCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCC 196486 | || | | | || | | | || ||||| || || || | || | | Sbjct 1560 ACCGGCGGCAAGAGCAAGCAGACGGAGGGCCTGCTGCTGCTGGACGTGACGCCGCTGACG 1619 Query 196487 CTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATT 196546 || || | || || || ||||| || ||||| | || | | ||||| || || Sbjct 1620 CTCGGCATCGAGACGGCCGGTGGCGTGATGACGGCGCTGATCAAGCGCAACACGACCATC 1679 Query 196547 CCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATT 196606 ||||| |||||| || |||| || ||||| | || || || || || || || || Sbjct 1680 CCGACGAAGAAGAGCCAGATCTTCTCGACGTACGCGGACAACCAGCCCGGCGTGCACATC 1739 Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || || || || || || | | || | ||||| ||| || || || ||||| Sbjct 1740 CAGGTGTACGAGGGCGAGCG-TGCGATGACGAAGGACTGCCACTCCCTGGGCACGTTCGA 1798 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 || | || || || | || || | ||||| || |||||| | || |||||| | Sbjct 1799 CCTGTCCGGCATCCCGCCGGCGCCGCGCGGTGTGCCGCAGATTGAGGTGACCTTCGACCT 1858 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 ||||| || || || || ||||| | || ||||| |||| | ||||| | | Sbjct 1859 GGACGCCAACGGCATCCTGAACGTGTCCGCGGAGGAGAAGGGCACGGGCAAGCGCAACCA 1918 Query 196786 GATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCA 196845 ||| || || || |||||||| || || ||||| || || || || ||||| | Sbjct 1919 GATCACCATCACGAACGACAAGGGCCGTCTGAGCAAGGACGACATCGAGCGCATGGTGAA 1978 Query 196846 AGATGCGGAAAAGTAC 196861 || ||| |||||| Sbjct 1979 CGACGCGTCCAAGTAC 1994 >seq655 Length=14210 Score = 257 bits (284), Expect = 2e-63 Identities = 476/693 (69%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || ||||| || | || || || ||||| || || || || | | || || | Sbjct 5160 GCCATCGGTATTGACCTCGGCACCACGTACTCGTGCGTGGGCGTCTTCAAGAACGACCAG 5101 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| ||||||| ||||| ||||| || || || |||||||| ||||| || Sbjct 5100 GTGGAGATCATCGCGAATGATCAAGGTAACCGCACGACGCCGTCGTACGTCGCCTTCACG 5041 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || || || || |||||||| || || ||| || |||||||| ||| Sbjct 5040 GAAACGGAGCGCCTGGTCGGCGATGCCGCGAAGAACCAGGTCGCGATGAACCCGCACAAC 4981 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||| || |||||||| | ||||| ||||||||| || | | | || | Sbjct 4980 ACCGTCTTCGATGCGAAGCGGATGATTGGCCGCAAGTTTGATGACCCGGATCTGCAGTCC 4921 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || ||| || | ||||| |||| || Sbjct 4920 GACATGAAGCACTGGCCCT-TCAAGGTGA--CCGTGAAGGACGGGAAGCCGGTGATCAAC 4864 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAA-ATTTCGTCTATGGTGTT 195657 || || | || || | || ||| | || ||||| || | || || | |||||| | Sbjct 4863 GTGGAGTACCAAGGGGCGACGAAG-ACCTTCTTCCCGGAGGAGATCTCCGCCATGGTGCT 4805 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||||| || ||| | | | | || | | ||||| ||||| || || Sbjct 4804 GCAGAAGATGAAGGAGACGGCCGAAGCCTACCTCGGCACCCCCGTGAAGGATGCCGTCGT 4745 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 ||| || || || ||||||| || || || || |||||||| |||||||| | | || Sbjct 4744 GACGGTGCCGGCGTACTTCAACGACTCGCAGCGTCAGGCGACGAAGGACGCGGGGTCGAT 4685 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 |||||| || ||| || | || ||||| || || || || || || || || || || Sbjct 4684 TGCGGGCCTCAACGTGCTGCGCATCATCAACGAGCCGACGGCCGCCGCCATCGCGTACGG 4625 Query 195838 TCTGGA---CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 |||| ||||||| | | | || || || || ||||||| ||||| || || || Sbjct 4624 CATGGACCGCAAGAACGACAAGGGCGAGAAGAACGTGCTGATCTTCGATCTGGGCGGCGG 4565 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| ||||| | || || | ||||| | ||| | ||||| || ||||| || || Sbjct 4564 CACGTTCGATGTGACGCTGCTGACGATTGAGAGCGGTGTTTTCGAGGTGAAGGCGACGGC 4505 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||| || || || || ||||| || ||||| Sbjct 4504 CGGTGACACCCACCTCGGCGGTGAGGACTTCGA 4472 >seq497 Length=18444 Score = 154 bits (170), Expect = 2e-32 Identities = 301/441 (68%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || |||||||| ||| | || || || ||||| || ||||| || ||||| || || || Sbjct 440 GCCATTGGTATTGATCTGGGCACGACGTACTCGTGCGTTGGCGTGTGGCAGAACGAGCGC 381 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| ||||| || ||||| || || || |||||||| || || || Sbjct 380 GTGGAGATCATCGCGAACGACCAGGGTAACCGCACGACGCCGTCGTACGTCGCGTTCACG 321 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || || | || |||||||| || || ||| || |||||||| ||| Sbjct 320 GACTCGGAGCGCCTGATCGGCGATGCCGCGAAGAACCAGGTCGCGATGAACCCGCACAAC 261 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || || ||||||||||| || ||||| |||||||| || || || | Sbjct 260 ACGGTGTTCGACGCGAAGCGCCTGATTGGCCGCAAGTTCAACGACTCCGTTGTGCAGGCG 201 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG--GTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| || || | ||| | || ||||| |||| | Sbjct 200 GACATGAAGCACTGGCCCT-TCAAGGTGACGACGAAGGGTGAC-GACAAGCCGGTGATCA 143 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || | || ||||| ||| | || || | || || || || || |||||| Sbjct 142 CGGTGCAGTTCCACGGCGAGGAAAAGACCTTCACGCCGGAGGAGATCAGCTCCATGGTGC 83 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 || | |||||||||||||| || || | | | | || || ||||| | || || | Sbjct 82 TGCTGAAGATGAAGGAGACGGCTGAGGCGTACCTCGGCAAGCAGGTGAAGAAGGCCGTGG 23 Query 195717 TGACTGTACCTGCTTACTTCA 195737 |||| || ||||| ||||||| Sbjct 22 TGACGGTGCCTGCCTACTTCA 2 >seq702 Length=13543 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| || || || || || || ||| | |||||||||||| | Sbjct 153 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTTGAGGCCAGC 94 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || ||||| || || ||||| ||||| || || || ||| Sbjct 93 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 34 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCT 172010 || || || || |||||||| || ||||| Sbjct 33 CAGCGCCTGATCTTTGCTGGCAAGCAGCT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657819647167280