Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq523 185 1e-40 seq2277 165 1e-34 seq685 104 3e-16 seq280 96.9 4e-14 seq133 89.7 6e-12 >seq523 Length=17530 Score = 185 bits (204), Expect = 1e-40 Identities = 228/312 (73%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| ||||| || || |||| ||| || || || ||||| ||||| | |||||| Sbjct 1841 GCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGCACCAAGCCGTT 1900 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 |||| ||||| ||||| || | |||| |||||||| ||| | ||||| || | Sbjct 1901 GGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGGACGTGCAG 1960 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||||||| |||| |||| ||||| ||||||| || ||||||||||||||||| Sbjct 1961 GCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATGCC 2020 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 ||||| ||| |||| | || || |||||||| | ||||| | || ||| Sbjct 2021 GTCGATGCTGTCTTCCTTTGAAGCGACAAGGAAGCACGAGCTCATCTGCGGCTTCGGCGT 2080 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 ||||||||||||||| || || || || |||||| || |||||||| ||||| Sbjct 2081 GCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCGCGACATCAGCTCGTA 2140 Query 1630362 GGTGGCGAGCAC 1630373 || || |||| Sbjct 2141 CGTCTCGCGCAC 2152 Score = 161 bits (178), Expect = 1e-33 Identities = 369/544 (68%), Gaps = 16/544 (3%) Strand=Plus/Plus Query 1626985 TCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGTC 1627044 |||||||| |||| ||| |||||||| || | | | |||||||| || |||| || ||| Sbjct 441 TCGACGGTGAACTTGATCGCGTCGGCAGCCGCCTTCGTGCGCAGGTAATACACACCCGTC 500 Query 1627045 TTGAGGCCGCGGCGCC-ACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCGTC 1627103 ||||| || || | || | | |||| | ||||||||||||| | | | || | | | Sbjct 501 TTGAGACC-CGACTCCCAGGTGTAGAAGAGCATCGACGTGATCTGACCAGAGGTGGGG-C 558 Query 1627104 GGCGCAGTAC-AGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCCA 1627162 |||| | ||||| ||||||||| |||||||| || | |||| ||| |||| Sbjct 559 TCTGCAGGAAGAGGTTCAGCGACTGGGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCA 618 Query 1627163 TGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTCGG 1627222 ||||||| || | || | |||||||||||| | ||| ||||||||||| Sbjct 619 TGTCGATCAGCTTGCGCTGCGGGATCTCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGT 678 Query 1627223 GCGGCACCTCGTCG-TCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCTGTCG 1627281 ||| | |||| ||| || | || ||||||| | || || | | Sbjct 679 CCGGGATGCTGTCGATCGTCA-------GGACGGAGCCGTTGTAGGAGATGATCTCATTC 731 Query 1627282 CGAAA-GTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGAC 1627340 || | ||| | ||||||| |||||| || ||| | | || |||| ||| || Sbjct 732 CGCATCGTCTCGT-TCCACAGCCCGCGCTTGATGAGGTCCATCACGAGGTACTTGTTCAC 790 Query 1627341 CACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCA 1627400 ||| | || ||||| ||||| ||||| ||||||||| ||||| |||| | Sbjct 791 CACCGGGAACTCGCCACTCAGCACACGGCGGACGTAGATGTTCGAGGTGAATGGCTCGAA 850 Query 1627401 CGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460 |||| ||||||| |||||||||||||||| || |||||||| | || | ||||| Sbjct 851 GCACTCGTTGTTGCCGAGGATCTGCGACGTCGACGCGGTGGGCATCGGGGCGAGCAGGAG 910 Query 1627461 CGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCAGCGGC 1627519 ||||||||||||||| ||| | | || || ||| ||||||||||||||| | Sbjct 911 GGAGTTGCGCAGGCCGACCTGAACCACCTTCTGC-TTCAGGCTGTCCCAGTCCCAGCGAC 969 Query 1627520 CGCT 1627523 |||| Sbjct 970 CGCT 973 Score = 147 bits (162), Expect = 3e-29 Identities = 299/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 ||||||| ||| |||||| || ||||||||||| | || | |||| || |||||| Sbjct 1395 GGCGACGTGTACTCGACGATTTCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTC 1454 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | |||||| | | |||| |||||||||| || ||| | || ||||||||||| Sbjct 1455 TTCTGGTTCGACTTGCTGTTGCACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCG 1514 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCG 1628330 ||||||| | ||| |||||| |||| | || |||| | | || | | ||| |||| Sbjct 1515 ATCTGCGACTCGAGGATGGCAAACCACACCTCCTGCGCCTGGATCGTCTGCACGC-CGCG 1573 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 ||||| || || || |||||||||| || ||| Sbjct 1574 GCCCTCTGCCTCGTACTTCTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAG 1633 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 || || | || ||| | |||| ||| | || || || | | || ||| Sbjct 1634 CCCCGGGCACGCGCTCGGGTCCATCAGCGTCCACTTCCCCTCGCTCTTCACTCGCTTCAT 1693 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 || ||||| ||||||| ||||| |||||||| ||||| || | || |||||||| Sbjct 1694 GAACAGGTCCGGGATCCACAGCGCGTAGAAGAGGTCACGCGCGCGCTGGTCGTCCTTGCC 1753 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 | ||| || || || || ||| |||||||| |||||||||||||||||| Sbjct 1754 GGTGTTGCGCTTCAGCAGCAGAAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGAT 1813 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| ||||| ||||||||||| |||||||| Sbjct 1814 GGCGAAGGCACCCTTGCGCTTACCGCCGCC 1843 >seq2277 Length=2457 Score = 165 bits (182), Expect = 1e-34 Identities = 232/321 (72%), Gaps = 11/321 (3%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||||||||| || | |||||| ||||| |||||||||| |||||||| Sbjct 526 CGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGAT 585 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTC---TTGTAGTGCTTTTCGCATCCGAGCGA 868806 || |||||| | |||||| | ||||| | ||||||||| || || ||||| Sbjct 586 CATCTCCATGAAGTCGAACGGCT---GCGTCACGTGGTAGTGCTTCTCCAGCCCCAGCGA 642 Query 868807 CGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC 868866 | | ||||| ||||| || || |||||||||||||| |||| || | ||||||||||| Sbjct 643 CACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCC 702 Query 868867 GATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGAC 868926 ||| ||| ||||||||||| |||| | ||||| |||||| | || || || || Sbjct 703 GATCAGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAC 762 Query 868927 GATGATCTGCCTGGGCACG-TCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCA 868982 |||||||| || | | || ||| || ||||| |||| | || |||| |||| Sbjct 763 GATGATCT-CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGCGTTGTACAGCA 821 Query 868983 GGCAGGCAAAGTCGCAGTGCA 869003 |||| || ||||| ||||| Sbjct 822 GGCACGCGAAGTCCGTGTGCA 842 Score = 165 bits (182), Expect = 1e-34 Identities = 225/314 (72%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || | |||||| ||||| || || | | |||| | ||| | Sbjct 1122 CCGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAGAACGCGCGCGCCTCCGGCACCT 1181 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || ||||||||| | || ||||||||| |||||| ||||||||| |||||| Sbjct 1182 TCACGTCGCCCATGAACCGCTCCGCAAGGTTCTCGATCACGATCCCGTCGCTGCCGGCGA 1241 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || ||||| ||||||||||| ||||| ||||| ||||| | ||| |||||||| | Sbjct 1242 AGAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGCTTCACCCAGTCGC 1301 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||||| || ||||| | |||||| |||||||| || ||| || |||| Sbjct 1302 GCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGT 1361 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || | ||| | | ||||| ||| ||||| || || ||||| ||||| |||| Sbjct 1362 ACTTGCGCCAGATGTCGTGGTACACGATCGGGAACAGCACGTAGCGGAACGGGTTCTCGC 1421 Query 869931 GCAACAGGGGTTCG 869944 || ||| || ||| Sbjct 1422 GCTGCAGCGGCTCG 1435 Score = 118 bits (130), Expect = 1e-20 Identities = 198/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||||| |||||||| || | || || ||||| || ||||||||| Sbjct 845 CCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGCCCGCGCTTC 904 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || ||||| ||||||||||| || ||||| || Sbjct 905 TTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAAGATGCCCTCCACCGCGGCGAAC 964 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||| |||||||| ||| ||| | | |||| ||||||| || |||||| Sbjct 965 CCGATCAGCCGCTCCTGGAAG--CTCGCGCCGCTCC----CGATCCACCGCACCGCCCAC 1018 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 || ||||| ||| | |||| | ||| | ||| ||| | | || | ||| || Sbjct 1019 TCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCC 1078 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | |||| ||| || ||||| | ||| | ||| || |||||| Sbjct 1079 TCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCC 1123 >seq685 Length=13810 Score = 104 bits (114), Expect = 3e-16 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 507103 GGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 507162 ||||||| | ||||||||| | || | | ||||||||| |||||||||||||| | Sbjct 4385 GGAGCGGCTGAAGGGCAAGTACGGCCGCCTGCGCGGCAATCTGATGGGCAAGCGCGTGGA 4326 Query 507163 CTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGT 507222 ||| | ||||| | || |||| |||||| | |||||| | |||||||| ||||| Sbjct 4325 CTTCTCGGCGCGTACGGTGATCACTGGCGACCCGAACATCGACGTCGACGAGGTCGGCGT 4266 Query 507223 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGT 507264 ||||| | ||| || |||||| || || || |||||||| Sbjct 4265 GCCCTTCTCGGTCGCCATGACGCTGACGTTCCCGGAGCGCGT 4224 >seq280 Length=27303 Score = 96.9 bits (106), Expect = 4e-14 Identities = 124/165 (75%), Gaps = 12/165 (7%) Strand=Plus/Minus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGG----GCAGCGTGCGCTC 733147 || ||||| | ||||| || |||||||| |||||||| || ||| | | ||||| Sbjct 15283 GGTGACAAGTTCTCGTCCCGGCACGGCCAGAAGGGCACGCTGCCGATGCA-CATCCGCTC 15225 Query 733148 -CACCGAGGACATGCCCTG-GTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAAC 733205 ||| ||| |||||| | | ||||| | |||| |||||||||| |||| |||||| Sbjct 15224 GCAC----GACCTGCCCTTTGCCACCGCGAG-CGGCATCACGCCCGACGTCGTCATCAAC 15170 Query 733206 CCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAG 733250 ||||||||| ||||||| |||||||| | |||| | |||| ||| Sbjct 15169 CCGCACGCCTTCCCGTCCCGCATGACGGTTGGCATGGTGCTGGAG 15125 >seq133 Length=39883 Score = 89.7 bits (98), Expect = 6e-12 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || || || |||||| |||||||| || | | | ||||| Sbjct 3816 CGAGATGGACCCGTCGATGATTCTGGGCATCTGCGCCTCCATCATACCCTACCCGAACCA 3875 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 732469 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || || Sbjct 3876 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGG--GTATC 3933 Query 732470 GTCGC-TC-AACGCCGACCACGC-CATCGACACGGTGTCGCACGCCCTGTGCTACCCGCA 732526 ||| || ||| | | || || ||| ||||| | |||| ||| | ||||||||| Sbjct 3934 TACGCATCGAACTTCCA-CATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCA 3992 Query 732527 GGTGCCGCTGGTGC 732540 ||||||||||| Sbjct 3993 AAAGCCGCTGGTGC 4006 Score = 89.7 bits (98), Expect = 6e-12 Identities = 128/176 (73%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC--GAGGACATGCCCTGGT 733167 || ||||| || ||||||||| |||| | | ||| || ||||||||||||| | Sbjct 4538 CGGCACGGGCAGAAGGGCACCAACGGCAT--TCAGTTCCGCCAGGAGGACATGCCCT--T 4593 Query 733168 CGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCA 733227 | | |||| ||||| | ||| ||| || | |||||||| |||||||| || || |||| Sbjct 4594 CAAC-CGCGACGGCGTCGTGCCGGACCTCATCATCAACCCCCACGCCATTCCCTCCCGCA 4652 Query 733228 TGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGC 733283 |||| ||| | | | ||||| ||||| ||||||||||| ||| | ||||| Sbjct 4653 TGACGGTGGCCCACCTCATCGAGACCCTCGCCGGCAAGGTGGCGTGCTACAAGGGC 4708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106712545713083