Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1483 114 1e-20 seq424 114 1e-20 seq2938 107 2e-18 >seq1483 Length=4907 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || ||||||| || || || Sbjct 4100 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCG 4159 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 4160 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 4219 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| ||||| || ||||||||||| | | | | || || Sbjct 4220 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTAC 4279 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 4280 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGGC 4330 >seq424 Length=20549 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || ||||||| || || || Sbjct 20486 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCG 20427 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 20426 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 20367 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| ||||| || ||||||||||| | | | | || || Sbjct 20366 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTAC 20307 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 20306 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGGC 20256 >seq2938 Length=1608 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || ||||| ||||| || || || ||||||| || || |||| |||||| | || | Sbjct 1604 AAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCCAGCGACACGATCGAGAAC 1545 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || |||||||| Sbjct 1544 GTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTT 1485 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||||||||| | | | | || || ||||| || ||||| ||| Sbjct 1484 GCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGGAGTCG 1425 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| | ||| |||| ||||||| || Sbjct 1424 ACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 1393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868362279720