Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2277 174 2e-37 seq523 152 8e-31 seq685 116 6e-20 seq133 107 3e-17 seq280 89.7 8e-12 seq167 89.7 8e-12 >seq2277 Length=2457 Score = 174 bits (192), Expect = 2e-37 Identities = 247/342 (72%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||| | |||||| ||| | || |||||||| |||||||| || | |||| Sbjct 500 GACGTGCCCTCCGTGCTCA---TCACACCCGCCTTCTGGTACTCGCCGACCTTCTTCTCG 556 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTC 793988 || ||||| |||||||||| |||||||||| |||||| | |||||| | |||| Sbjct 557 AAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTG---CGTC 613 Query 793989 A---GGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATG 794045 | ||||||||||||| ||| |||||| ||||||| ||||| || ||||| || ||| Sbjct 614 ACGTGGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCCACGAACTCGATG 673 Query 794046 TACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA 794105 ||||| |||| || | |||||||||||||| ||| ||| ||||||| |||| || Sbjct 674 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATG 733 Query 794106 AACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG-TCGGACGACGG 794164 ||||| |||||| | || || || | |||||||| || | | || ||| || | | Sbjct 734 AACTCGCGCTCGATGTTCACCGCGTCCACGATGATCT-CCAGCACGCGCTCGCGCGGCAG 792 Query 794165 CTTG---TCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 794203 |||| | || | || |||| |||||||| || ||||| Sbjct 793 CTTGTGCTTGATGTGCGCGTTGTACAGCAGGCACGCGAAGTC 834 Score = 140 bits (154), Expect = 5e-27 Identities = 200/279 (72%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || |||||| || | || |||||||| |||||| ||| Sbjct 1169 GCCTCCGGCACCTTCACGTCGCCCATGAACCGCTCCGCAAGGTTCTCGATCACGATCCCG 1228 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 |||||| ||||||| || || || ||||||||||| ||||| ||||| ||||| | ||| Sbjct 1229 TCGCTGCCGGCGAAGAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 1288 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 ||||||| | | ||||| ||| ||||||| |||||| ||||| | | || | Sbjct 1289 TTCACCCAGTCGCGCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGCAGCTC 1348 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| ||| |||||||| || |||| Sbjct 1349 TCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGTACACGATCGGGAACAGCACGTAGCGG 1408 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTCG-CATGACGCGTC 796427 ||||||||||| ||||||||||| | || |||||| Sbjct 1409 AACGGGTTCTCGCGCTGCAGCGGCTCGTCCTG-CGCGTC 1446 Score = 122 bits (134), Expect = 1e-21 Identities = 224/325 (69%), Gaps = 10/325 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| |||||||| || || || ||||| || ||||||||| Sbjct 845 CCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCCGGCATCAGCCCGCGCTTC 904 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || ||||| || ||||| ||||||||||| || ||||| || Sbjct 905 TTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAAGATGCCCTCCACCGCGGCGAAC 964 Query 794461 CCGACGAGCCGCTC--GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 |||| |||||||| || ||| || | | ||| ||||||| || ||||| Sbjct 965 CCGATCAGCCGCTCCTGG---AAG-CTCGCGCCGCTC----CCGATCCACCGCACCGCCC 1016 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 |||| ||||| ||| | | || | ||| | ||| ||| | | || | ||||| Sbjct 1017 ACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCT 1076 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | |||| ||| ||| ||||| | || | |||||| ||||| ||||||||||| | Sbjct 1077 CCTCGCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCCGAGTGGATGTTCT 1136 Query 794639 CGATGGCGATCTGGAAGCCATAAAA 794663 | || | |||||| || || || Sbjct 1137 CCATCATCAGCTGGAACCCGTAGAA 1161 >seq523 Length=17530 Score = 152 bits (168), Expect = 8e-31 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || || || |||| ||| || || || ||||| ||||| | |||||| Sbjct 1841 GCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGCACCAAGCCGTT 1900 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 |||| ||||| ||||| || | |||| ||| | || ||| | ||||| || | Sbjct 1901 GGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGGACGTGCAG 1960 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||||||| ||||||||| ||||| ||||||| |||||||| ||||||||||| Sbjct 1961 GCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTAGATGCC 2020 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||||| ||| |||| | | || |||||||| | ||||| || ||| Sbjct 2021 GTCGATGCTGTCTTCCTTTGAAGCGACAAGGAAGCACGAGCTCATCTGCGGCTTCGGCGT 2080 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||||| |||||||| || || || || Sbjct 2081 GCCGGCGTTGAAGAGGGTCGGGGTGGC 2107 Score = 149 bits (164), Expect = 1e-29 Identities = 364/543 (67%), Gaps = 14/543 (3%) Strand=Plus/Plus Query 2069254 TCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGTC 2069313 |||||||| |||| ||| |||| ||| || | | |||||||| || |||| || ||| Sbjct 441 TCGACGGTGAACTTGATCGCGTCGGCAGCCGCCTTCGTGCGCAGGTAATACACACCCGTC 500 Query 2069314 TTGAGGCCGCGACGCC-ACGCGTAGGCGTGCATCGACGTGATG-GACTCGGCATTCGGGA 2069371 ||||| || |||| || | | |||| | ||||||||||||| ||| | | || Sbjct 501 TTGAGACC-CGACTCCCAGGTGTAGAAGAGCATCGACGTGATCTGACCAGAGGTGGGGCT 559 Query 2069372 CGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCA 2069431 | ||| | ||||||| ||||||||| |||||||| || | |||||||| |||| Sbjct 560 CTGCAG-GAAGAGGTTCAGCGACTGGGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCA 618 Query 2069432 TGTCGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCG 2069491 ||||||| | ||| | | | |||||||||||| | | || ||||||| | Sbjct 619 TGTCGATCAGCTTGCGCTGCGGGATCTCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGT 678 Query 2069492 GCGGCACCTCGTCG-TCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCG 2069550 ||| | |||| || ||| | || ||||| | | ||||| | Sbjct 679 CCGGGATGCTGTCGATCGTCA-------GGACGGAGCCGTTGTAGGAGATGATCTCATTC 731 Query 2069551 CGAAA-GTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGAC 2069609 || | ||| | ||||||| |||||| || | | | || |||| ||| || Sbjct 732 CGCATCGTCTCGT-TCCACAGCCCGCGCTTGATGAGGTCCATCACGAGGTACTTGTTCAC 790 Query 2069610 CACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCA 2069669 ||| | || ||||| ||||| ||||| ||||||||| |||| |||| | Sbjct 791 CACCGGGAACTCGCCACTCAGCACACGGCGGACGTAGATGTTCGAGGTGAATGGCTCGAA 850 Query 2069670 CGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 |||| ||||||| |||||||||||||||| || |||||||| | || | || || Sbjct 851 GCACTCGTTGTTGCCGAGGATCTGCGACGTCGACGCGGTGGGCATCGGGGCGAGCAGGAG 910 Query 2069730 CGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCC 2069789 ||||||||||||||| ||| |||| | | |||| ||||||||||||||| || Sbjct 911 GGAGTTGCGCAGGCCGACCTGAACCACCTTCTGCTTCAGGCTGTCCCAGTCCCAGCGACC 970 Query 2069790 GCT 2069792 ||| Sbjct 971 GCT 973 Score = 131 bits (144), Expect = 3e-24 Identities = 304/462 (66%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 2071552 GCTGTCTCCGTTGGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTG 2071611 || |||||| ||||||| ||| ||||| || ||||||||||| | || | | Sbjct 1383 GCGGTCTCCTCCGGCGACGTGTACTCGACGATTTCCGTGCACAGGTTCGAGCACTTGATC 1442 Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 ||||| ||||||| |||||| | |||| |||||||||| ||| ||| | || Sbjct 1443 GTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGTCCTTGTACAGAATGAACGGG 1502 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG 2071731 | || ||||||||||||| | || |||||| |||| | | |||| | | || Sbjct 1503 ACGCCGGTCTCGATCTGCGACTCGAGGATGGCAAACCACACCTCCTGCGCCTGGATCGTC 1562 Query 2071732 GTCCTCGC-GCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTG 2071790 | | ||| |||||||| | ||| || || | |||||| Sbjct 1563 -TGCACGCCGCGGCCCTCTGCCTCGTACTTCTCGTACAGGCGCTCGAACTCCTCGCCGTA 1621 Query 2071791 GCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCAC 2071850 ||| || ||| || || | || |||| | |||| ||| | || | || Sbjct 1622 GCAGTCACTCAGCCCCGGGCACGCGCTCGGGTCCATCAGCGTCCACTTCCCCTCGCTCTT 1681 Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| || ||| |||||||| ||||||| |||| ||||| || ||||| || | Sbjct 1682 CACTCGCTTCATGAACAGGTCCGGGATCCACAGCGCGTAGAAGAGGTCACGCGCGCGCTG 1741 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 || ||||||||| ||| ||||| || || ||| || |||||| |||||||| Sbjct 1742 GTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGAAAGCCGAAGATGTCGGCATGCCACGG 1801 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||||||| ||| ||||| ||||||||||| |||||||| Sbjct 1802 CTCCAGGTAGATGGCGAAGGCACCCTTGCGCTTACCGCCGCC 1843 >seq685 Length=13810 Score = 116 bits (128), Expect = 6e-20 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 |||||| | ||||||||| | ||||| | ||||||||| |||||||||||||| | Sbjct 4385 GGAGCGGCTGAAGGGCAAGTACGGCCGCCTGCGCGGCAATCTGATGGGCAAGCGCGTGGA 4326 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 ||| ||||||| | || |||| | |||||| | |||||| | |||||||| ||||| Sbjct 4325 CTTCTCGGCGCGTACGGTGATCACTGGCGACCCGAACATCGACGTCGACGAGGTCGGCGT 4266 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGT 429220 ||||| | ||| || |||||| || || || |||||||| Sbjct 4265 GCCCTTCTCGGTCGCCATGACGCTGACGTTCCCGGAGCGCGT 4224 >seq133 Length=39883 Score = 107 bits (118), Expect = 3e-17 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || |||||| |||||| |||||||| |||| | ||||| Sbjct 3816 CGAGATGGACCCGTCGATGATTCTGGGCATCTGCGCCTCCATCATACCCTACCCGAACCA 3875 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| | |||||||||| ||||||| | |||||||| |||||| || || || Sbjct 3876 CAACCAGTCCCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGG--GTATC 3933 Query 653014 GTCGC-TC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCA 653070 ||| || ||| | | || || ||| |||||| | |||| ||||| ||||||||| Sbjct 3934 TACGCATCGAACTTCCA-CATGCGCATGGACACCACCGCCCACGTCCTCTTCTACCCGCA 3992 Query 653071 GGTGCCGCTGGTGC 653084 ||||||||||| Sbjct 3993 AAAGCCGCTGGTGC 4006 Score = 91.5 bits (100), Expect = 2e-12 Identities = 298/462 (65%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 653675 CGCCACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCGACC--GAGGAAATGCCGTGGT 653732 || |||||||| ||||||||| |||| | | || || ||||| ||||| | | Sbjct 4538 CGGCACGGGCAGAAGGGCACCAACGGCAT--TCAGTTCCGCCAGGAGGACATGCCCT--T 4593 Query 653733 CGCCGCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCA 653792 | | |||| |||| | ||| ||| || |||||||||| |||||||| || || |||| Sbjct 4594 CAAC-CGCGACGGCGTCGTGCCGGACCTCATCATCAACCCCCACGCCATTCCCTCCCGCA 4652 Query 653793 TGACCATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACG 653852 |||| ||| | | | || ||| ||||| ||||||||||| ||| | ||||| || Sbjct 4653 TGACGGTGGCCCACCTCATCGAGACCCTCGCCGGCAAGGTGGCGTGCTACAAGGGCGGCG 4712 Query 653853 TGGGCGACGGCACCCCGTTTGGCGGCGTCACCGTNNNNNNNNNNNNNNNNNAGTTGGCCC 653912 || ||| |||||| || || ||| || || | Sbjct 4713 AGGTGTACGCCACCCCCTTCTGCTCTGTCGTGGTGGATGACTTCGGCAAGGCCCTGCACG 4772 Query 653913 GCCACGGGTGCGAGCGCTACGGCAAGGAGGTGCTCTACCACCCGCACACGGGCGAGCCCA 653972 || | || |||| |||||||| ||| |||||| || ||||| ||| || Sbjct 4773 CCCTCAAGTCGCAGCGGTACGGCAACGAGTGCCTCTACAACGGCCACACCGGCCTCCCGC 4832 Query 653973 TGGAGGCGTTGATCTT-TTCGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCCATC 654031 |||| | ||||| |||||| || || ||||||| ||| ||| || | Sbjct 4833 TGGACCACCTCATCTTCTTCGGC-CCCACCTTCTACCAGCGGCTGAAGCACTTGTCGGGG 4891 Query 654032 GACAAGATCCACGCCCGGCCGCGCGGCCCCGTGCAGATGCTCACCAAGCAGCCGGTCGAG 654091 || ||||| |||||||| || ||||| || ||||| ||| ||||||| ||| Sbjct 4892 GATAAGATTCACGCCCGCCCACGCGGGCCGCTGCAGCCGCTGGTGCGGCAGCCGACGGAG 4951 Query 654092 GGCCGGTCGCGCTCGGGCGGCTTTCGCCTCGGAGAGATGGAG 654133 || || ||| | |||||| | ||| |||| ||||||||| Sbjct 4952 GGACGTGCGCACGAGGGCGGGCTGCGCTTCGGTGAGATGGAG 4993 >seq280 Length=27303 Score = 89.7 bits (98), Expect = 8e-12 Identities = 130/179 (73%), Gaps = 10/179 (6%) Strand=Plus/Minus Query 653642 CGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGG-- 653699 |||| ||| | || || ||||| | ||||| || ||||| || |||||||| || Sbjct 15298 CGCCCGCCGGCCGTCGGTGACAAGTTCTCGTCCCGGCACGGCCAGAAGGGCACGCTGCCG 15239 Query 653700 --GCAGCGTGCGCTCGACCGAGGAAATGCCGTG-GTCGCCGCGCGGGGGCGCCACGCCCG 653756 ||| | | |||||| ||| |||| | | | ||||| | || | |||||||| Sbjct 15238 ATGCA-CATCCGCTCGCACGACC---TGCCCTTTGCCACCGCGAGCGG-CATCACGCCCG 15184 Query 653757 ACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAG 653815 || |||||||||||||||||||| ||||||| |||||||| | |||| | || ||||| Sbjct 15183 ACGTCGTCATCAACCCGCACGCCTTCCCGTCCCGCATGACGGTTGGCATGGTGCTGGAG 15125 >seq167 Length=36551 Score = 89.7 bits (98), Expect = 8e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 652886 ACGCACGTCGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTT 652945 |||||| |||||||| | |||||| ||||||||| || ||||||||||| Sbjct 7821 ACGCACCTCGAGGTGGAGCCGCTGTCGCTGCTGGGCGTAGTGGCCGGCATCATCCCCTAC 7762 Query 652946 TCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 652999 || ||||||||||| || |||| |||| || |||| | ||||||||||||||| Sbjct 7761 CCCCACCACAACCAGTCGGCGCGTAACACCTTCCAGTCCGCCATGGGCAAGCAG 7708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915693358657361