Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq523 500 8e-137 seq2277 291 8e-74 seq1483 129 6e-25 seq424 129 6e-25 seq2938 111 2e-19 seq702 111 2e-19 >seq523 Length=17530 Score = 500 bits (554), Expect = 8e-137 Identities = 1191/1775 (67%), Gaps = 49/1775 (3%) Strand=Plus/Plus Query 147932 CGAGTAGGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCA 147991 || || |||||| | | |||||||| || |||| ||||||||||| ||| ||| Sbjct 458 CGCGTCGGCAGCCGCCTTCGTGCGCAGGTAATACACACCCGTCTTGAGACCCGACTCCCA 517 Query 147992 TGCGTAGTCGTGCACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAA 148051 | |||| | ||| ||||| || | | || ||| | ||| || || || | Sbjct 518 GGTGTAGAAGAGCATCGACGTGATCTGACCAGAGGTGGGGCTCTGCAGGAAGAGGTTCAG 577 Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 ||||||| |||||| ||| || ||| ||||| |||||| || || || ||| Sbjct 578 CGACTGGGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAG---CTTGCG 634 Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 || | |||||||| | || ||| ||| ||||| | || || |||| |||||| Sbjct 635 CTGCGGGATCTCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCCGGGATGCTGTCGAT 694 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTC-CGTGT-ATAGG 148226 | | || |||||| || | | |||| ||| ||||| |||| ||| | || Sbjct 695 CGTCAGGACGGAGCCGTTGTAGGAGATGATCTCATTCCGCAT--CGTCTCGTTCCACAGC 752 Query 148227 TTGAGCTCGATCAGGTC-ATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAG 148285 | ||| ||| ||||| ||| | || |||| ||||||||| | |||||||| || Sbjct 753 CCGCGCTTGATGAGGTCCATC-ACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAG 811 Query 148286 CACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAAT 148345 ||| || || | || | ||| || || || || || ||||||||||||| | || Sbjct 812 CACACGGCGGACGTAGATGTTCGAGGTGAATGGCTCGAAGCACTCGTTGTTGCCGAGGAT 871 Query 148346 CTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATT 148405 ||||| |||| || |||||||| || | ||| || |||||||||| ||| | Sbjct 872 CTGCGACGTCGACGCGGTGGGCATCGGGGCGAGCAGGAGGGAGTTGCGCAGGCCGACCTG 931 Query 148406 TTTTATTTTGCGCTTCAGAGCCG-CCCAGTCCCAGAG-CGGC------GACGGTGTCACG 148457 | || ||||||| || | ||||||||||| | | || |||| | | Sbjct 932 AACCACCTTCTGCTTCAG-GCTGTCCCAGTCCCAGCGACCGCTGTTAGGACGCGGGTTC- 989 Query 148458 TTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTAC 148517 ||||||||||| |||||| ||||| |||| || || ||||||| | | | ||| Sbjct 990 TTCCACATGTCAAACTGCAAGATGCCCTGGCTCGCCGGACTGCCCTTGAAGGTCTCGTAA 1049 Query 148518 GGTCCGTGCGCCGCCGCCAGTTCGCAGCT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTC 148576 || || | | || ||||| || || | |||||| | |||| | |||| |||||||| Sbjct 1050 GGGCCTTCCTCCTTCGCCAACTC-CATCGACGCCTCCACCGCGGCAAAGTAGATCGTCTC 1108 Query 148577 GGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCAC 148636 | || | | || | | || |||| | || || | |||| |||||| | | Sbjct 1109 GAAGATCTCCGCATTCACCCGCTGCGCCTCGGCACTGACGAAGGGCAGACGCAGTAGAAT 1168 Query 148637 AAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAG 148696 || || || || |||||||| || || | ||| | || |||| |||||| | | Sbjct 1169 GAAGGCATCCGCCAGGCCCTGCACACCGAGGCCCACCGGGCGGTTGCGCATGTTGCTGCG 1228 Query 148697 GCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCAC 148756 |||||| |||| | ||| |||| ||||||||| |||| | || || ||||| | Sbjct 1229 GCGCGCCGTCTCCACCGGGTAGTAGTTGCGGTCAATGACCCGGTTCAGGTTGCGGGTGAT 1288 Query 148757 CACCTTTGTAATTCTGCGCAGCAATT------CAAAATCGTACTTGTCATCT---ACGAT 148807 | ||| || | ||| ||||| | | | ||| ||| || || |||| Sbjct 1289 CTGCTTCGTGACGCTGTACAGCAGCTGGTGATCCACCTCGCGCTTCTCCTCGTTCACGAA 1348 Query 148808 GCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTA 148867 || ||| || |||||| ||||| || ||||||||||| ||||| ||||| | |||| Sbjct 1349 GCG-CGG--CAGGGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTA 1405 Query 148868 CTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCT 148927 ||| ||||| || | |||||| || ||| |||||| ||| | |||||| || || Sbjct 1406 CTCGACGATTTCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGA 1465 Query 148928 CTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||||||||||||||||||||||||||| ||| |||| |||| || || | ||||| || Sbjct 1466 CTTGCTGTTGCACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTC 1525 Query 148988 CACTATG--AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGC 149045 | ||| || | | || |||||||| | | |||| || ||| ||||| | Sbjct 1526 GAGGATGGCAAACCA--CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCTGCC 1583 Query 149046 TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCAC 149105 ||||| ||||| ||||||||| ||||||||||||| || || || |||||| Sbjct 1584 TCGTACTTCTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCAC 1643 Query 149106 TTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCG 149165 | |||| ||| |||| |||| || || | ||| |||||||| ||||| || Sbjct 1644 GCGCTCGGGTCCATCAGCGTCCACTTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCC 1703 Query 149166 GGCACCCAGAGCGCGTACATGAGGT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGC 149223 || | ||| |||||||| | ||||| ||||||| || ||| || ||| |||||| Sbjct 1704 GGGATCCACAGCGCGTAGAAGAGGTCACGCGCGCGCTG--GTCGTCCTTGCCGGTGTTGC 1761 Query 149224 GGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCG 149283 | ||| || | || ||| ||||| || ||||||||||| | ||| | |||| | Sbjct 1762 GCTTCAGCAGCAGAAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGG 1821 Query 149284 CGCCCTTGCGCTT---GCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAA 149340 | ||||||||||| |||||||||||| |||| || | ||||||| ||||| || | Sbjct 1822 CACCCTTGCGCTTACCGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCA 1881 Query 149341 CCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTC 149400 ||| || | | ||| ||| || ||||| || | ||| |||||| | | Sbjct 1882 GCATCGGCACCAAGCCGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGC 1941 Query 149401 GCACTTTGTGCACGTTGACGCCGATGCCG-CCGCCGTACTTTGAGATGGCCGCGCAGTCG 149459 | | ||||| |||| | |||||||||| |||||| ||| |||| | ||||| || Sbjct 1942 GGATGTTGTGGACGTGCAGGCCGATGCCGCCCGCCG-CCTTGCTGATGACGGCGCACTCC 2000 Query 149460 CCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAG 149519 ||||| ||||||||| ||||||||||| ||| | | || ||||||||| Sbjct 2001 TTCAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTTGAAGCGACAAGGAAGCACGAG 2060 Query 149520 CACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATAT 149579 | ||| ||||| |||||||||| ||| | ||| ||| ||||||| || || | Sbjct 2061 CTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAG 2120 Query 149580 TTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCT 149639 | ||||| |||||||| |||| |||| | | |||| | |||||||||| Sbjct 2121 CCGCGCGACATCAGCTCGTACGTCTCGCGCACATTCTTGAGGTCACCAACATGGATGCCG 2180 Query 149640 ATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 ||||| || |||| | | |||||||| ||||| Sbjct 2181 ATGGCAACACGCAGGAAAAGCTGCTGCGGACGCTC 2215 >seq2277 Length=2457 Score = 291 bits (322), Expect = 8e-74 Identities = 581/841 (69%), Gaps = 50/841 (6%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||||||| ||||| || ||||| || ||||||| || ||| || | | Sbjct 532 CTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTC 591 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || |||||||| | || ||| ||| ||| | | |||| | || ||||| Sbjct 592 CATGAAGTCGAACGGCTGCGTCACGTGGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAG 651 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 |||||||| || ||||| ||||||| |||| || |||||||||||| | || | Sbjct 652 CCGGTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCG 711 Query 120531 CACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 |||||||| || || || || ||||| ||| |||| |||||| ||| || || Sbjct 712 CACCGGCAGCG-CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCT 770 Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGA--TGCGCGTTCGGTAGTACAGGCACGC 120647 | |||| | || |||| |||||| | || |||||||| ||| ||||||||| Sbjct 771 CCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGCGTT--GTACAGCAGGCACGC 828 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 ||||||||||||||||||||||||||||| |||||||||||||| |||||||| || || Sbjct 829 GAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCCGG 888 Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCC-GAAAAGAACACGC 120766 ||| | || | |||| | |||| | || ||| | | ||| || ||||| | || Sbjct 889 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGC-GCAGAACGACCCGGAGAAGAAGATGC 947 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 ||||||| ||| || ||| || ||||| || ||| || | ||| |||||| Sbjct 948 CCTCCACCGCGGCGAACCCGATCAGCCGCTCCTGGAAGCTCG-CGCC--GCTCCCGATCC 1004 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCA 120886 || || |||||||| ||||| || | | |||||| ||| || || ||||| ||||| Sbjct 1005 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGCGTGCAGCA 1064 Query 120887 GCATGTCGC-GCTCGCCCTCCTCCGCAATCAGCTGATGGATG--------AGCAGATTGT 120937 || ||| ||| ||||| ||| || | ||||| | | |||| || Sbjct 1065 GC----CGCAGCT---TCTCCT-CGCTGTCCG-TGATGTACGTGTCCAGCAGCACCGAGT 1115 Query 120938 ACATTTCCGTGTGCACGCACTCGATCAGCACTTGCTGG---TTGTAAAAGTACTGCGCCT 120994 || | |||| ||| | | ||| |||| || ||||| ||| || |||||| Sbjct 1116 ACGTCTCCGAGTGGATGTTCTCCATCATCA---GCTGGAACCCGTAGAACGCGCGCGCCT 1172 Query 120995 CCAGCTCGGGCAC--CGCCCGCTGCATGTA---CTCGATAAGGTTAATATTCACGATACT 121049 || || | ||| |||| |||| | ||| |||||| ||||||| | Sbjct 1173 CCGGCACCTTCACGTCGCC-----CATGAACCGCTCCGCAAGGTTCTCGATCACGATCCC 1227 Query 121050 GTCGGCGGCGGCGAAGAACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAG 121109 |||| | |||||||||||||||||||||||||||| ||||| ||||| |||| | || Sbjct 1228 GTCGCTGCCGGCGAAGAACGCCAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAG 1287 Query 121110 CTTGTGCGCAAAATCG-TCATAGTCCTTGGACAGGTCGACCTCCTCCACCTTCCACATGC 121168 ||| | | | ||| ||| ||| ||| |||||||| |||||||| | |||| |||| Sbjct 1288 CTT---CACCCAGTCGCGCAT-GTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCAGATGC 1343 Query 121169 A 121169 | Sbjct 1344 A 1344 >seq1483 Length=4907 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| ||||||||||| Sbjct 4299 GTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 4240 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 4239 GCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 4180 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||||| | | ||| || |||| | || || ||||||||||| || Sbjct 4179 ACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTC 4120 Query 133644 TTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 4119 TTCACGAAGATCTGCATGG 4101 >seq424 Length=20549 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| ||||||||||| Sbjct 20287 GTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 20346 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 20347 GCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 20406 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||||| | | ||| || |||| | || || ||||||||||| || Sbjct 20407 ACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTC 20466 Query 133644 TTTACGAAAATCTGCATGG 133662 || ||||| |||||||||| Sbjct 20467 TTCACGAAGATCTGCATGG 20485 >seq2938 Length=1608 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| ||||| ||||||||||| Sbjct 1423 GTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCG 1482 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1483 GCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 1542 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||||| ||| ||| || |||| | || || ||||||||||| || Sbjct 1543 ACGTTCTCGATCGTGTCGCTGGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTC 1602 Query 133644 TTTACG 133649 || ||| Sbjct 1603 TTCACG 1608 >seq702 Length=13543 Score = 111 bits (122), Expect = 2e-19 Identities = 122/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || | || || ||||||||||| || |||||||| |||||||| | Sbjct 5 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 64 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||| | | ||| | ||||||| ||| ||| || |||| | || || ||| Sbjct 65 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCAACCTCGAGCGCGATCGTCTTG 124 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTTATT 133672 |||||||| || || ||||| || |||||| | |||| ||| Sbjct 125 CCGGTCAGCGTCTTCACGAAGATTTGCATGTC-TATTGATT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483389383690760