Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq523 262 4e-65 seq2277 111 1e-19 >seq523 Length=17530 Score = 262 bits (290), Expect = 4e-65 Identities = 903/1377 (66%), Gaps = 41/1377 (3%) Strand=Plus/Plus Query 146866 TTAATGAGGTC-ATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACG 146924 || |||||||| |||| | |||| || ||||| | |||||||| ||||||||| Sbjct 759 TTGATGAGGTCCATCACG-AGGTACTTGTTCACCACCGGGAACTCGCCACTCAGCACACG 817 Query 146925 TCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGC 146984 | || || | || ||||| ||||| || |||| || ||||| | || || | Sbjct 818 GCGGACGTAGATGTTCGAGGTGAATGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGA 877 Query 146985 CGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGAT 147044 ||| | ||||| ||||| || | || | || || ||||| ||| | | | Sbjct 878 CGTCGACGCGGTGGGCATCGGGGCGAGCAGGAGGGAGTTGCGCAGGCCGACCTGAACCAC 937 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCAC--ATCGACG--AGG--GCGTCACGTTCCACAT 147098 || | ||||| | | ||||||||| | || | ||| ||| |||||||| Sbjct 938 CTTCTGCTTCAGGCTGTCCCAGTCCCAGCGACCGCTGTTAGGACGCGGGTTCTTCCACAT 997 Query 147099 GTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTC 147158 ||| |||| | | || | || || |||||||| ||| || ||| || || Sbjct 998 GTCAAACTGCAAGATGCCCTGGCTCGCCGGACTGCCCTTGAAGGTCTCGTAAGGGCCTTC 1057 Query 147159 GCGCTGCGCCAATTCACAGCTT-GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTT 147217 || |||||| || || | ||||| | ||| || |||| || || ||| ||| | Sbjct 1058 CTCCTTCGCCAACTC-CATCGACGCCTCCACCGCGGCAAAGTAGATCGTCTCGAAGATCT 1116 Query 147218 GTTTGTTTAGGACGGT-CGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCA 147276 || | || | ||| || | || || | |||| |||||| || | |||||| Sbjct 1117 CCGCATTCACC-CGCTGCGCCTCGGCACTGACGAAGGGCAGACGCAGTAGAATGAAGGCA 1175 Query 147277 TCGGCCAAACCCTGGATACCGACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCGC 147335 || |||| ||||| | ||||| ||| | || || | || | ||||||||| ||| Sbjct 1176 TCCGCCAGGCCCTGCACACCGAGGCCCACCGGGCGGTTGCGCAT-GTTGCTGCGGCGCGC 1234 Query 147336 GCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTT 147395 || | | || |||| |||||| ||||| | | ||| ||||| || | || Sbjct 1235 CGTCTCCACCGGGTAGTAGTTGCGGTCAATGACCCGGTTCAGGTTGCGGGTGATCTGCTT 1294 Query 147396 AGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT--ACGCATTGG 147453 || | | | || || | ||| | || || |||| | ||| ||| | | Sbjct 1295 CGTGACGCTGTACAGCAGCTGGTGATCC-ACCTCGCG-CTTCTCCTCGTTCACGAAGCGC 1352 Query 147454 TTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCAC 147512 || |||||| || || || ||||| ||||| ||||| || |||| || |||||| || Sbjct 1353 GGCAGGGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACG-TGTACTCGAC 1411 Query 147513 GATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCG 147572 |||||| | ||||||||| ||| || || || | || | ||| || || | Sbjct 1412 GATTTCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCT 1471 Query 147573 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 ||||||||||| ||| | || ||| |||| |||||||||||| |||| || | ||| Sbjct 1472 GTTGCACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGAT 1531 Query 147633 ---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTA 147689 ||||| || |||||||| | | | |||| ||||||||| ||||| Sbjct 1532 GGCAAACCA---CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCCTCTGCCTCGTA 1588 Query 147690 CCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATG 147749 | |||||||| ||||| ||||| ||||||||||| || || || || ||| Sbjct 1589 CTTCTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGCT 1648 Query 147750 CGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCAC 147809 ||| |||||||| |||| | | || || || || ||| ||||| ||||| | Sbjct 1649 CGGGTCCATCAGCGTCCACTTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGAT 1708 Query 147810 CCACAGCGCGTACATAAGAT--CGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTC 147867 |||||||||||| | || | ||||||| || || || ||| ||||||| ||| Sbjct 1709 CCACAGCGCGTAGAAGAGGTCACGCGCGCGCTG--GTCGTCCTTGCCGGTGTTGCGCTTC 1766 Query 147868 AAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCT 147927 | || | || |||||||||| ||||| || || | ||||| ||| | ||||| Sbjct 1767 AGCAGCAGAAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCC 1826 Query 147928 TTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATG 147984 || ||||| ||||||||||| || | || | ||||||| ||||| |||| ||| Sbjct 1827 TTGCGCTTACCGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATC 1886 Query 147985 GGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACT 148044 || ||| |||| | | || ||||| ||| ||| | ||||||| || || | Sbjct 1887 GGCACCAAGCCGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATG 1946 Query 148045 TCGTGCACGTTAACGCCAATGCCG-CCGCCGTACTTTGAT-ATGGCAGCGCAATCGCCCA 148102 | ||| |||| | ||| |||||| |||||| | ||| | ||| | ||||| || || Sbjct 1947 TTGTGGACGTGCAGGCCGATGCCGCCCGCCG--CCTTGCTGATGACGGCGCACTCCTTCA 2004 Query 148103 ATGTCGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAA-AAAACACGAACA 148160 || ||||||||||||||||||||| | ||||| || | ||| || ||||| | Sbjct 2005 GCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTTGAAGCGA--CAAGGAAGCACGAGCT 2062 Query 148161 CATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA 148217 ||| ||||| || |||| || || ||| ||||| || | ||||| || || || Sbjct 2063 CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAA 2119 >seq2277 Length=2457 Score = 111 bits (122), Expect = 1e-19 Identities = 245/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 891 ATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 832 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 831 TTCGCGTGCCTGCTGTACAACGCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 773 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| ||||| | ||||| |||||||| Sbjct 772 GGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 715 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| |||||||| Sbjct 714 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTGGCGGA 656 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | | | | ||||| || || Sbjct 655 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACCACGTGACGCAGCCGTTCGACTT 596 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| | | || ||||| ||||||| || || || |||||||| ||||| ||||| Sbjct 595 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTA 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476580226229640