Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq87 215 6e-51 >seq87 Length=48621 Score = 215 bits (238), Expect = 6e-51 Identities = 421/614 (69%), Gaps = 16/614 (3%) Strand=Plus/Minus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||||||| |||| | ||||||||| ||| |||||||||||| || || ||||||| Sbjct 37914 CCAGCTGCTGCTTCAACGCCTCCACGTGATTGCTGTAGACGTGCGCATCACCGAGGGTGT 37855 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025 |||| | || || || || || ||| | | || | || | ||| |||||||||| Sbjct 37854 GCACCAGCTCACCTGGACGCAGCCCCGTCGCCTTTGCGATCAGGATGGTCAGCAGCGAGT 37795 Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085 | || |||||||| || ||||| || |||||||| | |||| |||||||||| || Sbjct 37794 ACGACGCGATGTTGAACGGCACCCCGAGACCCATGTCACAGGACCGCTGGTACAGCATGC 37735 Query 147086 ACGAGAGCTCC-CCGTCGGC-----CACGTAAAACTGGCACAGGATGTGGCACGGCGGCA 147139 | || |||||| |||| || ||||| ||||||| || | |||||| ||||| | Sbjct 37734 AGGACAGCTCCTTCGTCTGCGTGTTGACGTAGAACTGGCCGAGCAGGTGGCAGGGCGGGA 37675 Query 147140 GCGCCATGGCGGGCAGGTCCGCG---GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC- 147195 | ||||| | |||| |||| |||||||| |||| || | |||||| | | || Sbjct 37674 GTGCCATCTGGTGCAG---CGCGCACGGGTTCCACGCCGTGAAGAGCAGCCGGC-GATCG 37619 Query 147196 TCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCG 147255 | |||||| |||| | |||| || | | | | ||||||||| || | || || Sbjct 37618 TTCGGGTTCGTCTTGAGGGTCTCGACAATCTGCTTGATCTGGTCCACCCCTTCTCCGTCG 37559 Query 147256 TAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACT 147315 ||||| | || || || ||| ||||| ||||| | ||||||||||||||| || Sbjct 37558 TAGTTCGCGTCGAAGCCCTTATACTCTGCCCCGAAGTGACGCCACTGGAAGCCGTAGACG 37499 Query 147316 GGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGA 147374 || || ||||| | |||| | || ||||| | | | || ||||| | || Sbjct 37498 GGGCCGAGGTC-CATCTCTTTGTTCGCCGTCAGCCCACGGCTGTCCAGGAACTCCCGTGA 37440 Query 147375 CCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCC 147434 |||| | ||||||||||| | ||||| | | ||| || | || ||| ||| Sbjct 37439 GCCGTTGCCGTCCCAGATGTGGATGTCCTTGTCCGCCAGCAACTGCGCGTTCGTCTCGCC 37380 Query 147435 CCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAG 147494 || | |||||| | |||||||| | || || | ||| ||||| | ||| || ||||| Sbjct 37379 ACGTAGGAACCAAATAAGCTCCTCGCACACGCCGCGCCAGAAGACACGCTTCGTCGTCAG 37320 Query 147495 CAGGGGGAACTGGT 147508 ||| || | ||||| Sbjct 37319 CAGCGGCAGCTGGT 37306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583450080573600