Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2277 271 1e-66 seq523 170 3e-36 seq685 104 3e-16 seq133 95.1 2e-13 seq280 91.5 2e-12 >seq2277 Length=2457 Score = 271 bits (300), Expect = 1e-66 Identities = 422/596 (71%), Gaps = 9/596 (2%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||| |||||| |||||| ||||| || |||||||| ||| ||||| Sbjct 1435 CGAGCCGCTGCAGCGCGAGAACCCGTTCCGCTACGTGCTGTTCCCGATCGTGTACCACGA 1376 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||| | |||| || || ||| || | | ||||| |||||| |||||| Sbjct 1375 CATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACC 1317 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| ||||| | | |||||||| ||||| ||||| ||||| || |||||||||| Sbjct 1316 TGGGCAACGACATGCGCGACTGGGTGAAGCTGAACGACGGGGAGCGGCACTTCATCAAGC 1257 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| || || || || ||||| |||||| || |||||| ||||||||| || | || Sbjct 1256 ACGTGCTGGCGTTCTT-CGCCGGCAGCGACGGGATCGTGATCGAGAACCTTGCGGAGCGG 1198 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || ||| || || | |||| ||||| || ||| |||||||||||| | || Sbjct 1197 TTCATGGGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATG 1138 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| || || |||||| | ||| | ||||| ||| ||| |||| | Sbjct 1137 GAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACATCACGGACAGCGAG 1078 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 |||||| | || | | ||| ||| | ||| | |||| | ||| ||||| || Sbjct 1077 GAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCGTGCATCCAGAAGAAGGCGGAG 1018 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 |||||| || ||||||| |||| | | ||| ||| |||||||| |||| | Sbjct 1017 TGGGCGGTGCGGTGGATC----GGGAGCGGCGCGA-GCTTCCAGGAGCGGCTGATCGGGT 963 Query 1456195 TTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||||| || ||||||||||| ||||| || |||||||| | || ||||| |||| Sbjct 962 TCGCCGCGGTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGA 903 Query 1456254 AGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||| || ||||| || || | || |||||||| | ||| |||||||| Sbjct 902 AGCGCGGGCTGATGCCGGGGCTGACG-TTCAGCAACGAGCTGATCTCGCGCGACGA 848 Score = 138 bits (152), Expect = 2e-26 Identities = 213/297 (72%), Gaps = 14/297 (5%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCG 1456508 ||||| ||||| || || ||||| |||| || | |||| ||||| | || || Sbjct 842 TGCACACGGACTTCGCGTGCCTGCTGTACAACGCGCACATCAAGCACAAGCTGCCGCGCG 783 Query 1456509 A---CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | ||||| | |||||||||| || || || | |||||| ||||| || ||| Sbjct 782 AGCGCGTGCT---GGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCG 726 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||||||||| ||| ||||||||||||| | ||| |||| |||||||| | | Sbjct 725 ACGCGCTGCCGGTGCGGCTGATCGGCATGAACG-CGGAGCTGATGTCGCAGTACATCG-A 668 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCT-CGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 || || || ||||| ||||| | | |||| |||| |||||||||||||| | | Sbjct 667 GTTCGTGGCGGACCGGCTGCTTGTGTCGCTGGGGCT--GGAGAAGCACTACCACGTGACG 610 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 | |||||| | |||||| |||||||||| |||||||||| ||||| |||||| Sbjct 609 CAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAG 553 >seq523 Length=17530 Score = 170 bits (188), Expect = 3e-36 Identities = 227/313 (73%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 259874 GTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTCAGCGACGCCCACGCT 259932 |||| || || |||||| ||||||| || | || |||||| || || || || || Sbjct 2152 GTGCGCGAGACGTACGAGCTGATGTCGC-GCGGCTTCTTCACCCACGCCACCCCGACCCT 2094 Query 259933 CTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGC 259992 ||| || |||||||||||| ||||||| |||||||| || | | |||| Sbjct 2093 CTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCCTTGTCGCTTCAAAGGA 2034 Query 259993 CGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGC 260052 || ||||| |||||||| |||||||| ||| ||||||| ||||| ||||||||| Sbjct 2033 AGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGC 1974 Query 260053 CGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCAC 260112 ||||||||||| | || ||||| | ||| |||| ||| |||| | || ||||| Sbjct 1973 GGGCGGCATCGGCCTGCACGTCCACAACATCCGCTCCGCCGGCAGCTACATCGCCGGCAC 1914 Query 260113 CAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTA 260172 ||||| |||||||||| | ||||| ||||| || || || ||| |||| || || || Sbjct 1913 GAACGGGACGTCCAACGGCTTGGTGCCGATGCTGCGTGTGTTCAACAACACTGCCCGTTA 1854 Query 260173 CGTCGACCAGTGC 260185 ||| |||||| || Sbjct 1853 CGTGGACCAGGGC 1841 Score = 145 bits (160), Expect = 1e-28 Identities = 366/545 (67%), Gaps = 16/545 (3%) Strand=Plus/Minus Query 262870 AGCGGCCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAAC 262929 ||||| ||||||||||||||| ||| | | ||| ||| |||||||||||| Sbjct 973 AGCGGTCGCTGGGACTGGGACAGCCTGAAGCAGAAGGTGGTTCAGGTCGGCCTGCGCAAC 914 Query 262930 TCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAG 262989 || | || | || | |||||||| || |||||||||||||||| ||||||| |||| Sbjct 913 TCCCTCCTGCTCGCCCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAACAACGAG 854 Query 262990 GCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACC 263049 |||||| |||| ||||||||| ||||| ||||| ||||| || | Sbjct 853 TGCTTCGAGCCATTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGTGGCGAGTTCCCG 794 Query 263050 GTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTT 263109 ||||| ||| |||| || | | | | | |||||| ||||||| | ||| | Sbjct 793 GTGGTGAACAAGTACCTCGTGATGGACCTCATCAAGCGCGGGCTGTGGAA-CGAGACGAT 735 Query 263110 CGCGACCG-GCTCAT-TGCGGCACAGGGCTCGGTGCAGGGCTTTGACGA-CGAGGAGGTG 263166 || | | |||| | | || | ||||| || | |||||| ||| | Sbjct 734 GCGGAATGAGATCATCTCCTACA-ACGGCTCCGTCC-------TGACGATCGACAGCATC 683 Query 263167 CCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATT 263226 ||| ||| ||||||| |||| | |||||||||||| | || | || | || Sbjct 682 CCGGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATCCCGCAGCGCAAGCTGATC 623 Query 263227 GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTC 263286 || ||||| |||||||| | || |||||||| ||||||||| ||||| | ||| Sbjct 622 GACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCCCAGTCGCTGAACCTCTTCCT- 564 Query 263287 GCCGA-CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGC-GTCGCGGCC 263344 || || ||| || | | ||||||||||||| | ||| | ||| |||| || | Sbjct 563 GCAGAGCCCCACCTCTGGTCAGATCACGTCGATGCTCTTCTACACCTGGGAGTCG-GGTC 505 Query 263345 TCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCG 263404 ||||||| || |||| || |||||||| | | |||||| |||| || | ||||||| Sbjct 504 TCAAGACGGGTGTGTATTACCTGCGCACGAAGGCGGCTGCCGACGCGATCAAGTTCACCG 445 Query 263405 TCGAT 263409 ||||| Sbjct 444 TCGAT 440 Score = 89.7 bits (98), Expect = 7e-12 Identities = 319/501 (64%), Gaps = 14/501 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||||| ||||||||||| ||||| ||| ||||||||| |||||||| |||||| || Sbjct 1843 GGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATCTACCTGGAGCCGTGGCATGCCGACATC 1784 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || || ||| || || ||| |||||| || || | | ||||||| Sbjct 1783 TTCGGCTTTCTGCTGCTGAAGCGCAACACCGGCAA------GGACGACCAGCGCGCGCGT 1730 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || ||||| |||| ||||||| |||||||| ||| || || || || | Sbjct 1729 GACCTCTTCTACGCGCTGTGGATCCCGGACCTGTTCATGAAGCGAGTGAAGAGCGAGGGG 1670 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 | ||| |||| | |||| || | || || ||| || ||||| |||| || Sbjct 1669 AAGTGGACGCTGATGGACCCGAGCGCGTGCCCGGGGCTGAGTGACTGCTACGGCGAGGAG 1610 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCC---C 262084 || || ||| || ||| ||| | | || || | Sbjct 1609 TTCGAGCGCCTGTACGAGAAGTACGAGGCAGAGGGCCGCG-GCGTGCAGACGATCCAGGC 1551 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 ||| | || | |||| ||||| ||| | | || |||||||||||| || | ||| Sbjct 1550 GCAGG--AGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACCGGCGTCCCGTTCATT 1493 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 | ||||||||||| |||| | |||||| ||||||| ||||| | | || | Sbjct 1492 CTGTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACGATCA-AGTG 1434 Query 262205 -GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAA 262263 | ||||||||||| || |||||| ||| ||||||| ||| | |||||||| Sbjct 1433 CTCGAACCTGTGCACGGAAATCGTCGAGTACACGTCGCCGGAGGAGACCGCCGTGTGCAA 1374 Query 262264 CCTCTCGAGCGTGGCCCTGCC 262284 |||| | | | |||||||| Sbjct 1373 CCTCGCCTCCATCGCCCTGCC 1353 >seq685 Length=13810 Score = 104 bits (114), Expect = 3e-16 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 1818084 ACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCAATG 1818143 |||||||| || || || |||||| || ||| | |||||||||| |||||||| | | Sbjct 4224 ACGCGCTCCGGGAACGTCAGCGTCATGGCGACCGAGAAGGGCACGCCGACCTCGTCGACG 4283 Query 1818144 TCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCCATG 1818203 || || | |||||| |||| || | ||||| | |||| |||||||||||||| Sbjct 4284 TCGATGTTCGGGTCGCCAGTGATCACCGTACGCGCCGAGAAGTCCACGCGCTTGCCCATC 4343 Query 1818204 CAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 ||||||||| | | ||| | ||||||||| | ||||||| Sbjct 4344 AGATTGCCGCGCAGGCGGCCGTACTTGCCCTTCAGCCGCTCC 4385 >seq133 Length=39883 Score = 95.1 bits (104), Expect = 2e-13 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 1601274 GCACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCATGGTCG 1601332 ||||||||||| ||||||||| | ||| |||| | ||||| ||| ||||| | | Sbjct 4006 GCACCAGCGGCTTTTGCGGGTAGAAGAGGACGTGGGCGGTGGTGTCCATGCGCATG-TGG 3948 Query 1601333 GCGTT-GA-GCGACACGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGC 1601390 ||| || ||| || || || |||||| |||||||| | ||||||| |||||| Sbjct 3947 AAGTTCGATGCGTAGATAC--CCATGGCCTGCTTACCCATGGCGGACTGGTAGGTGTTGC 3890 Query 1601391 GCGGCGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCA 1601450 |||| | |||||||||||| | | || |||||||| |||||| |||||| || | | Sbjct 3889 GCGGGGACTGGTTGTGGTTCGGGTAGGGTATGATGGAGGCGCAGATGCCCAGAATCATCG 3830 Query 1601451 GCGGGTGGACCTCG 1601464 ||||| | |||| Sbjct 3829 ACGGGTCCATCTCG 3816 >seq280 Length=27303 Score = 91.5 bits (100), Expect = 2e-12 Identities = 133/181 (73%), Gaps = 14/181 (8%) Strand=Plus/Plus Query 1600576 CTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTC 1600635 ||||| || | |||| | |||||||| ||||||| ||||||||||||||| || | ||| Sbjct 15125 CTCCAGCACCATGCCAACCGTCATGCGGGACGGGAAGGCGTGCGGGTTGATGACGACGTC 15184 Query 1600636 GGGCGTGGCACCGC-CGC-GAGGCGACCAGGGCATGTCCTCGGTG-GAGCGCACGCTGC- 1600691 ||||||| |||| ||| | ||| | |||||| ||| ||| ||||| | | ||| Sbjct 15185 GGGCGTGATGCCGCTCGCGGTGGCAA--AGGGCAGGTC----GTGCGAGCGGATG-TGCA 15237 Query 1600692 ---CCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCTCGGGCTGGC 1600748 || |||||||| |||||||| || ||||| | ||||| || || | ||| ||| Sbjct 15238 TCGGCAGCGTGCCCTTCTGGCCGTGCCGGGACGAGAACTTGTCACCGACGGCCGGCGGGC 15297 Query 1600749 G 1600749 | Sbjct 15298 G 15298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177309746894238