Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1483 127 2e-24 seq424 127 2e-24 seq2938 113 4e-20 seq702 100 3e-16 >seq1483 Length=4907 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| || || | || || | || || Sbjct 4312 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 4253 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||||| || | || |||||||||| Sbjct 4252 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 4193 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | ||||||||||| || ||||| | || |||||| || Sbjct 4192 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTT 4133 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || ||||| || |||||||| Sbjct 4132 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 4103 >seq424 Length=20549 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| || || | || || | || || Sbjct 20274 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 20333 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||||| || | || |||||||||| Sbjct 20334 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 20393 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | ||||||||||| || ||||| | || |||||| || Sbjct 20394 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCTT 20453 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || ||||| || |||||||| Sbjct 20454 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 20483 >seq2938 Length=1608 Score = 113 bits (124), Expect = 4e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 1428 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 1487 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 1488 GATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 1547 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | || ||||| | || |||||| || || |||| || ||||| Sbjct 1548 CTCGATCGTGTCGCTGGCCTCGACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1607 >seq702 Length=13543 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| |||| ||||||||||||| || | || |||||||||| Sbjct 4 CAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 63 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | ||||||||| | || ||||| | || |||||| || Sbjct 64 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCAACCTCGAGCGCGATCGTCTT 123 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || ||||| || || ||||| Sbjct 124 GCCGGTCAGCGTCTTCACGAAGATTTGCAT 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450764304050920