Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq523 141 9e-29 seq1483 96.9 4e-15 seq424 96.9 4e-15 seq2938 93.3 4e-14 >seq523 Length=17530 Score = 141 bits (156), Expect = 9e-29 Identities = 443/675 (66%), Gaps = 11/675 (2%) Strand=Plus/Minus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 |||||||||||||||||||| ||| |||||||| || |||||| || | || | Sbjct 2035 GAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGC-AAGGC 1977 Query 7795 GGC-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTC 7853 ||| ||||| || || ||| |||| || || | ||| || ||| ||| ||||| Sbjct 1976 GGCGGGCGGCATCGGCCTGCACGTCCACAACATCCGCTCCGCCGGCAGCTACATCGCCGG 1917 Query 7854 CACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCG 7913 ||| ||||| | ||| ||| || | ||| ||| |||| |||||||| ||| | | || Sbjct 1916 CACGAACGGGACGTCCAACGGCTTGGTGCCGATGCTGCGTGTGTTCAACAACACTGCCCG 1857 Query 7914 ACATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTG 7970 | || |||||| || || |||||||| || ||| |||||||| |||||||||| Sbjct 1856 TTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATCTACCTGGAGCCGTG 1797 Query 7971 GCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCA 8029 ||| || ||||| | || | || ||| ||||||| || || || |||| Sbjct 1796 GCATGCCGACATCTTCGGCTTTCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGC- 1738 Query 8030 AAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATT 8089 ||||| || || |||| || ||||| | || || ||||| |||| ||| || | Sbjct 1737 GCGCGCGTGACCTCTTCTACGCGCTGTGGATCCCGGACCTGTTCATGAAGCGAGTGAAGA 1678 Query 8090 TCGACGCACAATGGTCGCTCATGTGCCCCGATCG-TTGCCCTTTATTAAAAAACGTTTAC 8148 ||| | | ||| |||| ||| | ||||| || ||||| | | || ||| Sbjct 1677 GCGAGGGGAAGTGGACGCTGATG-GACCCGAGCGCGTGCCCGGGGCTGAGTGACTGCTAC 1619 Query 8149 GGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGG-CGCGTACGTGCGGCA 8207 || | || || | ||||| | | ||||| || || |||| ||||| | Sbjct 1618 GGCGAGGAGTTCGAGCGCCTGTACGAGAAGTACGAGGCAGAGGGCCGCG-GCGTGCAGAC 1560 Query 8208 AGTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCC 8267 | | |||| || || ||||| |||| | || | ||| ||||| | || Sbjct 1559 GATCCAGGCGCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACCGGCGTCCC 1500 Query 8268 GTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCAT 8327 || ||| |||||||| ||||| |||||| ||| || || | ||| | ||||| || Sbjct 1499 GTTCATTCTGTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACGAT 1440 Query 8328 TTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGT 8387 ||| || |||||| | ||||| || |||||| |||| || || ||||| Sbjct 1439 CAAGTGCTCGAACCTGTGCACGGAAATCGTCGAGTACACGTCGCCGGAGGAGACCGCCGT 1380 Query 8388 TTGCAATCTAGCGTC 8402 ||||| || || || Sbjct 1379 GTGCAACCTCGCCTC 1365 >seq1483 Length=4907 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 4320 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 4261 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 4260 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 4201 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || || || ||||| | Sbjct 4200 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCG 4141 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 4140 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 4103 >seq424 Length=20549 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| ||||| || ||||| || ||||||||||| ||| ||| | Sbjct 20266 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 20325 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 20326 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 20385 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || || || ||||| | Sbjct 20386 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCG 20445 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 20446 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 20483 >seq2938 Length=1608 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| ||||| || ||||| || ||||||||||| | | ||| | Sbjct 1402 AGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 1461 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| |||||||| || ||||| ||||| || Sbjct 1462 CCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1521 Query 134616 TTTTCTTGAATTTT 134629 || || || || || Sbjct 1522 TTGTCCTGGATCTT 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505365555421480