Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq523 111 5e-19 seq2277 87.8 6e-12 >seq523 Length=17530 Score = 111 bits (122), Expect = 5e-19 Identities = 443/682 (65%), Gaps = 14/682 (2%) Strand=Plus/Minus Query 254834 GAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCG 254893 |||||||| ||| | ||||||| ||| ||||| | ||||| || | || | || Sbjct 2035 GAAGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCG 1976 Query 254894 AGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG 254953 |||||| | || || || || |||| | ||| || ||||| || ||| | Sbjct 1975 GCGGGCGGCATCGGCCTGCACGTCCACAACATCCGCTCCGCCGGCAGCTACAT-CGCCGG 1917 Query 254954 -ACGAACGGACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCG 255012 |||||||| | | |||| | | || ||| | ||||||||||||||| || || Sbjct 1916 CACGAACGGGACGTCCAACGGCTTGGTGCCGATGCTGCGTGTGTTCAACAACACTGCCCG 1857 Query 255013 CTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTG 255072 ||||| || || || ||||| || ||| || || ||| ||||||||||||||||||| Sbjct 1856 TTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATCTACCTGGAGCCGTG 1797 Query 255073 GCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGAT 255132 ||| |||||||| | ||| | |||||| ||| ||||||| || || | | Sbjct 1796 GCATGCCGACATCTTCGGCTTTCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCG 1737 Query 255133 CGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACG 255192 ||| || ||| ||| | ||| | ||| | || ||||| ||| || ||| | | Sbjct 1736 CGCGCGTGACCTCTTCTACGCGCTGTGGATCCCGGACCTGTTCATGAAGCGAGTGAAGAG 1677 Query 255193 AGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCT-AGTCGACTCTTGGG 255251 || | || |||| || ||| || | | | || || || ||| |||| | | Sbjct 1676 CGAGGGGAAGTGGACGCTGATGGACCCGAGCGCGTGCCCGGGGCTGAGT-GACTGCTACG 1618 Query 255252 GTGACGAGTTTGAAAAACTGTATCTGGAGTACGAGCGTGCCGGCCGGTTCGTAC-GCCAA 255310 | || ||||| || ||||| | |||||||| | ||||| ||| | | | | Sbjct 1617 GCGAGGAGTTCGAGCGCCTGTACGAGAAGTACGAGGCAGAGGGCCGCGGCGTGCAGACGA 1558 Query 255311 GTGCCCGCGAAGAAGATCTGGAACACGATGGTGCGCAT-GCAGCTGGAAACCGGAATGCC 255369 | | ||| || || | ||| | || | || | |||| | || ||||| | || Sbjct 1557 -TCCAGGCGCAGGAGGTGTGGTTTGCCATCCT-CGAGTCGCAGATCGAGACCGGCGTCCC 1500 Query 255370 GTTCCTATTGCACAAAGAC-CACATAAACGCACGGTCGAACCAACGCCACCGCGGTACGA 255428 |||| | || |||| ||| | || ||| ||||||||| ||| ||| |||| Sbjct 1499 GTTCATTCTGTACAAGGACGCGTGCAACAGCA-AGTCGAACCAGAAGAACCTCGGCACGA 1441 Query 255429 TACGCGGCTCGAACCTGTGCACCGAGATTACGT--TGCACACGTCAGCGCAAGAGGTGGC 255486 | |||||||||||||||| || || ||| | ||||||| || | ||| || Sbjct 1440 TCAAGTGCTCGAACCTGTGCACGGAAAT--CGTCGAGTACACGTCGCCGGAGGAGACCGC 1383 Query 255487 CGTTTGCAACTTGGCGTCCATC 255508 ||| |||||| | || |||||| Sbjct 1382 CGTGTGCAACCTCGCCTCCATC 1361 >seq2277 Length=2457 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 915 TTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCG 856 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| |||||||| || || || |||| | |||||| |||| Sbjct 855 CGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACGCGCACATCAAGCAC 796 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 795 AAGCTGCC 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588230197464555