Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq523 102 1e-16 seq373 93.3 5e-14 seq2277 82.4 1e-10 seq803 82.4 1e-10 seq706 82.4 1e-10 seq569 82.4 1e-10 seq285 82.4 1e-10 >seq523 Length=17530 Score = 102 bits (112), Expect = 1e-16 Identities = 545/855 (64%), Gaps = 23/855 (3%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || |||||||| || || | ||||| || || ||||| ||| |||||||| | Sbjct 1353 GGCAGGGCGATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACG 1412 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| || || | ||| || | ||| ||||| || | ||||| ||||| ||| || Sbjct 1413 ATTTCCGTGCACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTG 1472 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 |||||||| |||||||| || ||| | || || ||||| |||| || | ||| || Sbjct 1473 TTGCACGCGTCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATG 1532 Query 111410 GCCTTCCAAACATCG-GCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 || ||| || || ||| |||| | || | | || ||||| ||||||||||| Sbjct 1533 GCAAACCACACCTCCTGCGCCTGGATCGTCTGCAC-GCCGCGGCCCTCTGCCTCGTACTT 1591 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG-TCTG 111527 ||| ||| || |||||||| || ||| || || || | | || | Sbjct 1592 CTCGTACAGGCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGGGCACGCGCTCGG 1651 Query 111528 GACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 | | | || | ||| || || | || || || ||||||||||| ||||| || ||| Sbjct 1652 GTC-CATCAGCGTCCACTTCCCCTCGCTCTTC-ACTCGCTTCATGAACAGGTCCGGGATC 1709 Query 111587 CACAGGGATGAAAAGAGATCTCTACAC-CGAGCCTCTTCGTCACCTTG-----GTTGAGT 111640 ||||| | | ||||| || || | || | || |||| ||||| |||| | Sbjct 1710 CACAGCGCGTAGAAGAGGTC---ACGCGCGCG-CTGGTCGT--CCTTGCCGGTGTTGCGC 1763 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 111700 | | || || | | ||| || || ||||| ||||| || |||| |||| | Sbjct 1764 TTCAGCAGCAGAAAGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCA 1823 Query 111701 CCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| || || || | || | || || || || ||| ||| || || || ||| Sbjct 1824 CCCTTGCGCTTACCGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGC 1883 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCT 111816 || || | | || | || || || || || || || | || | Sbjct 1884 ATCGGCACCAAGCCGTTGGACGTCCCGTTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCG 1942 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | | |||| ||||| || || || || ||| ||| ||| || |||||| | Sbjct 1943 GATGTTGTGGACGTGCAGGCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTT 2002 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 || || | ||||| |||| ||| ||| ||||| |||| ||||||||| | Sbjct 2003 CAGCGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTTGAAGCGACAAGGAAGCACGAGCT 2062 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 ||||||||| | || || || || ||||||||||| || || ||||| |||| | || Sbjct 2063 CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCC 2122 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 | |||||| ||||| ||||| ||| | | ||| | | ||||||||||| Sbjct 2123 GCGCGACATCAGCTCGTACGTCTCGCGCACATTCTTGAGGTCACCAACATGGATGCCGAT 2182 Query 112057 TGCGACCCGCATGAA 112071 || || |||| ||| Sbjct 2183 GGCAACACGCAGGAA 2197 >seq373 Length=22324 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 21499 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 21440 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 21439 CTGGTAGGAGC 21429 >seq2277 Length=2457 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || ||| ||| || ||||| || || || || || || || ||| || || Sbjct 827 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCC 886 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | |||||||| ||||||||||||||||| Sbjct 887 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAAGATG 946 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 947 CCCTCCAC 954 >seq803 Length=11636 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 9574 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 9515 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 9514 CAGGTAGGAG 9505 >seq706 Length=13469 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 13233 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 13292 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 13293 CAGGTAGGAG 13302 >seq569 Length=16354 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 5850 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 5909 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 5910 CAGGTAGGAG 5919 >seq285 Length=27111 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 27009 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 26950 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 26949 CAGGTAGGAG 26940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627991185770400