Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq523 210 3e-49 seq2277 125 9e-24 >seq523 Length=17530 Score = 210 bits (232), Expect = 3e-49 Identities = 1079/1695 (64%), Gaps = 47/1695 (3%) Strand=Plus/Plus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||||| | || ||||| |||| ||||||||||| ||| || ||||| || | || Sbjct 471 GCCTTCGTGCGCAGGTAATACACACCCGTCTTGAGACCCGACTCCCAGGTGTAGAAGAGC 530 Query 117888 ATTGAGGACAACTTGG-AGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 117946 || || | | || ||||| | || || | || ||||||||||| ||||| || Sbjct 531 ATCGACGTGATCTGACCAGAGG-TGGGGCTCTGCAGGAAGAGGTTCAGCGACTGGGACTG 589 Query 117947 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCA 118006 |||||| | | || || || ||||| || |||| | | | ||| ||||| Sbjct 590 GTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGCGGGATCTCCCA 649 Query 118007 CACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCC 118066 ||| || | |||||| | ||| | || || ||||| |||| | ||| ||| || Sbjct 650 CACGGTGCGGTAGAGCTCCTTGAGGTCGTCCGGGATGCTGTCGATCGTCAGGACGGAGCC 709 Query 118067 ACCCGCCTTGACCATGAGATCCTTCAT-ATCCTTTGA--CCAGAGACCAATCTTTTTGAG 118123 | | |||| || ||| ||| | | ||| || || ||| |||| Sbjct 710 GTTG---TAGGAGATGATCTCATTCCGCATCGTCTCGTTCCACAGCCCGCGCTTGATGAG 766 Query 118124 ATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 118183 ||| |||||| | ||| || || || ||||| || || || | | || Sbjct 767 GTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAGCACACGGCGGACGTA 826 Query 118184 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGC 118243 ||| || | ||| ||||||| |||||||| ||||| || | ||| || | || || || Sbjct 827 GATGTTCGAGGTGAATGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGACGTCGACGC 886 Query 118244 TGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC--CTTTTCCCTAATGCGTTCC 118301 |||||||| || || | || ||| ||| || || || | | || | | | | Sbjct 887 GGTGGGCATCGGGGCGAGCAGGAGGGAGTTGCGCAGGCCGACCTGAACCACCTTC--TGC 944 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCC-------CTGCCACATATCAAA 118354 || || ||||||||| || || | ||| | || |||||| ||||| Sbjct 945 TTCAGGCTGTCCCAGTCCCAGC-GACCGCTGTTAGGACGCGGGTTCTTCCACATGTCAAA 1003 Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414 ||| | ||| || ||| ||| || |||| || ||||| || ||||| || ||| Sbjct 1004 CTGCAAGATGCCCTGGCTCGCCGGACTGCCCTTGAAGGTCTCGTAAGGGCCTTCCTCCTT 1063 Query 118415 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATT 118474 |||||| || |||||| | || || || || || || || || ||||| Sbjct 1064 CGCCAACTCCATCGACGCCTCCACCGCGGCAAAGTAGATCGTCTCGAAGATCTCCGCATT 1123 Query 118475 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 118534 || || |||||| | | || | || || | ||| || ||||||| || Sbjct 1124 CACCCGCTGCGCCTCGGCACTGACGAAGGGCAGACGCAGTAGAATGAAGGCATCCGCCAG 1183 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG--GTCTCC 118592 || || ||||||||||| | ||||| | | ||| || || | | ||| |||||| Sbjct 1184 GCCCTGCACACCGAGGCCCACCGGGCGGTTGCGCATGTTG--CTGCGGCGCGCCGTCTCC 1241 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | || || |||| || || || ||||| ||| |||| Sbjct 1242 ACCGGGTAGTAGTTGCGGTCAATGACCCGGTTCAGGTTGCGGGTGATCTGCTTCGTGACG 1301 Query 118653 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 | ||| | || ||| | ||| |||| || || || | || |||||| Sbjct 1302 CTGTACAGCAGCTGGTGATCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAGGGCG 1361 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || || || || ||||| | |||||| ||| |||||||| | ||||||||| Sbjct 1362 ATGGAGGCGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACGATTTCCGTG 1421 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 |||| ||| || | ||| || ||||| | |||||| || || ||||| |||| ||||| Sbjct 1422 CACAGGTTCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCG 1481 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| || ||| | || || ||||| | || |||| ||| || || ||| Sbjct 1482 TCCTTGTACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGGCAAACCAC 1541 Query 118893 ACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || | | || |||| | || | | || |||||| |||||||||| ||| || Sbjct 1542 ACCTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCCTCTGCCTCGTACTTCTCGTACAG 1600 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT-GGGCAGAAGA 119010 | || ||||| || || | || ||||| || || || ||| | | Sbjct 1601 GCGCTCGAACTCCTCGCCGTAGCAGTCACTCAGCCCCGG-GCACGCGCTCGGGTCCATCA 1659 Query 119011 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 | | ||| || || | ||| || || ||||||||||| ||||| |||||||| ||||| Sbjct 1660 GCGTCCACTTCCCCTCGCTCTTC-ACTCGCTTCATGAACAGGTCCGGGATCCACAGCGCG 1718 Query 119070 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 ||||||| || || ||| ||| || || | || ||| | || | || || Sbjct 1719 TAGAAGAGGTCACG--CGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGAA 1776 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 119184 || | | ||| || || |||||||| |||||||| | |||| | ||||| || || Sbjct 1777 AGCCGAAGATGTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGCGCTTAC 1836 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 || |||||| || || | |||||| ||| || ||||| ||||| || | | | Sbjct 1837 CGCCGCCCTGGTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGCACCAAGC 1896 Query 119245 CATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 | | ||| || || || || ||| || | | || | || | ||||| Sbjct 1897 CGTTGGACGTCCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGGAC 1954 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 ||||| || || || || ||| ||| ||| ||||||||| | || || |||| Sbjct 1955 GTGCAGGCCGATGCCGCCCGCCGCCTTGCTGATGACGGCGCACTCCTTCAGCGTGTCGTA 2014 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGAGG 119419 ||| || ||||| ||| |||| |||| ||||||| |||| ||| || || Sbjct 2015 GATGCCGTCGATGCTGTCTTCCTTTGAAGCGACAAGGAAGCACGAGCT---CATCTGCGG 2071 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 119479 | | || || || ||||||||||| || || || |||||| |||| | || | ||||| Sbjct 2072 CTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCGCGACAT 2131 Query 119480 CTTGTCGTAGGTCTC 119494 | ||||| ||||| Sbjct 2132 CAGCTCGTACGTCTC 2146 >seq2277 Length=2457 Score = 125 bits (138), Expect = 9e-24 Identities = 282/416 (68%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| ||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 647 AGCAGCCGGTCCGCCACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 706 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||||||| | ||| |||| ||| || ||| | | Sbjct 707 AGCCGCACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCACGATG 766 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 767 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGCGTTGTACAGCAGGC 824 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| ||| Sbjct 825 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGC 883 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 884 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCGGAGAAGAAG 943 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || |||||||| |||||| | | || ||||| || | || | | | | Sbjct 944 ATGCCCTCCACCGCGGCGAACCCGATCAGCCGCTCCTGGAA-GCTCGCGCC--GCTCCCG 1000 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 1001 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 1056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618395009442440