Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq523 300 2e-76 seq261 114 1e-20 seq307 98.7 1e-15 >seq523 Length=17530 Score = 300 bits (332), Expect = 2e-76 Identities = 542/782 (69%), Gaps = 18/782 (2%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| | |||||| |||| || ||| | || ||||| | || ||| || | ||| Sbjct 2209 CCGCAGCAGCTTTTCCTGCGTGTTGCCATCGGCATCCATGTTGGTGACCTCAAGAATGTG 2150 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 || ||||||||||| | ||| | | ||| || |||||||| || ||||| ||| Sbjct 2149 CGCGAGACGTACGAGCTGATGTCGCGCGGCTTCTTCACCCACGCCACCCCGACCCTCTTC 2090 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGAT 53356 ||||| || ||| | || |||||| |||| ||||||| || || ||||| Sbjct 2089 AACGCCGGCACGCCGAAGCCGCAGATG---AGCTCGTGCTTCCTTGTCGCTTCAAAGGAA 2033 Query 53357 GACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCG 53416 ||| ||||||||||||||||| ||||| |||||||| ||| |||| |||| | || Sbjct 2032 GACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTCATCAGCAAGGCGGCG 1973 Query 53417 GGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACG 53476 || || ||||| | ||| | ||| |||| | ||||| ||| || ||| Sbjct 1972 GGCGGCATCGGCCTGCACGTCCACAACATCCGCTCCGCCGGCAGCTACATCGCCGGCACG 1913 Query 53477 AACGGCGTCG-CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 ||||| | || || | || | ||||| ||||| || || ||||||||||| ||||| || Sbjct 1912 AACGG-GACGTCCAACGGCTTGGTGCCGATGCTGCGTGTGTTCAACAACACTGCCCGTTA 1854 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| ||||||| || || ||||||||||| | |||||||||||||| ||||||||||| Sbjct 1853 CGTGGACCAGGGCGGCGGTAAGCGCAAGGGTGCCTTCGCCATCTACCTGGAGCCGTGGCA 1794 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 |||||||| | | ||||| |||| | || || | || || |||| Sbjct 1793 TGCCGACATCTTCGGCTTTCTGCTGCTGAAGCGCAACACCGGCAAGGACGACCAGCGCGC 1734 Query 53656 CCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGG 53714 |||||||| || ||| || |||||||| |||||||| |||||| | ||| ||| | Sbjct 1733 GCGTGACCTCTTCTAC-GCGCTGTGGATCCCGGACCTGTTCATGAAGCGAGTGAAGAGCG 1675 Query 53715 ACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CTACGGT 53773 | | | ||||| |||||| ||||| || |||||| || || || | | |||||| Sbjct 1674 AGGGGAAGTGGACGCTGATGGACCCGAGCGCGTGCCCGGGGCT-GAGTGACTGCTACGGC 1616 Query 53774 GAGGAGTTTAACGAG---ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAG 53830 |||||||| |||| |||| || ||||| | |||||||| | | ||| | Sbjct 1615 GAGGAGTT---CGAGCGCCTGTACGAGAAGTACGAGGCAGAGGGCCGCGGCGTGCAGACG 1559 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 || |||||| ||||| ||| ||| |||||| || ||| | ||||| || ||| Sbjct 1558 ATCCAGGCGCAGGAGGTGTGGTTTGCCATCCTCGAGTCGCAGATCGAGACCGGCGTCCCG 1499 Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 | ||| |||||||| || |||| ||| |||||||||||| ||||| ||| Sbjct 1498 TTCATTCTGTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACGATC 1439 Query 53951 AA 53952 || Sbjct 1438 AA 1437 Score = 172 bits (190), Expect = 6e-38 Identities = 311/450 (69%), Gaps = 5/450 (1%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||||||||| || | || || ||||| |||||||||||| | |||||| | Sbjct 925 GGCCTGCGCAACTCCCTCCTGCTCGCCCCGATGCCCACCGCGTCGACGTCGCAGATCCTC 866 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| |||||||| | ||| | ||||||||| | ||||| || Sbjct 865 GGCAACAACGAGTGCTTCGAGCCATTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGT 806 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || ||||| || | |||||| ||||||| | |||||| ||| | |||| Sbjct 805 GGCGAGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATCAAGCGCGGGCTGTGG 746 Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGA--ATCTGGAGA 55715 ||| | ||| || || || | || || ||||||| || ||| || Sbjct 745 AACGAGACGATGCGGAATGAGATCATCTCCTACAACGGCTCCGTCCTGACGATCGACAGC 686 Query 55716 TTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 ||| || | |||||||| | ||||| || ||||||||||| || ||| | ||| Sbjct 685 ATCCCGGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATCCCGCAGCGCAAGCTG 626 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 || |||||| || || || ||||||||||||||||||||| |||||| ||||| Sbjct 625 ATCGACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCCCAGTCGCTGAACCTCTTC 566 Query 55835 ATGGAGA-ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 || ||| || | |||| | || | | ||||||| ||| ||| ||| || ||| Sbjct 565 CTGCAGAGCCCCACCTCTGGTC-AGATCACGTCGATGCTCTTCTACACCTGGGAGTCGGG 507 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||||||||||| |||| || ||||| || Sbjct 506 TCTCAAGACGGGTGTGTATTACCTGCGCAC 477 >seq261 Length=28860 Score = 114 bits (126), Expect = 1e-20 Identities = 272/395 (69%), Gaps = 17/395 (4%) Strand=Plus/Plus Query 152743 AGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCA 152802 || || |||||| | ||| | | ||||| || || || || |||||||| ||||| Sbjct 16825 AGATTTGGCCAGAAGCAGTGAATGAAGTTGATGAGCAGCCCTTTAATGTGCGACCCGTCG 16884 Query 152803 AGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTA-GTGACC-CGT 152860 ||||| ||||| ||||||||| ||| | ||||||||||| | ||| ||| | ||| Sbjct 16885 TGATCCTGGTCGGACATGATCATAAGATGCCCGTAGCGCAG--CCCGTCCGTGTTCTCGT 16942 Query 152861 AGACCTTTC-CATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCG 152919 | || | || || || ||| | |||||| | | | | | |||||| | | Sbjct 16943 ACTTCTGCCGCAGGTCGAGACCC-ATGATCTTCATCACGCTCTGGATCTCCTCACACTGG 17001 Query 152920 GTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACG 152979 | || || || | || || || || || ||| | ||||| || || || || ||||| Sbjct 17002 GCCAGCTTCTTGAGCGACGCCTCGCGCACGTTGAGGGGCTTGCCACGTAGCGGGAACACA 17061 Query 152980 CCGAACGCGTTGCGG-CCTACAACGCTCAGACCGGCAATAGCA-AGGGCTTTCGCCGAGT 153037 ||||| || |||| ||| || || || ||||| | ||| || | || || |||| Sbjct 17062 CCGAAGTAGTCGCGGTCCTTCACGGCG-AGGCCGGCCGT-GCAGAGCGTCTTGGCGGAGT 17119 Query 153038 CACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCG---GCCCAGTTGG 153094 |||||||||| | ||| ||||| ||| ||| ||| || | ||| ||| ||||| Sbjct 17120 CACCCTCGGTCAGAATGAGCGTGCAGCGGTGG--CCG-TGCTTGCCGCCAGCCTCGTTGG 17176 Query 153095 CGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTT 153129 ||||||| ||||| ||||||||| | || |||||| Sbjct 17177 CGTCGTCCAGCTTCGGGATTCCCATAAT-CTGCTT 17210 >seq307 Length=25638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCC-ACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||| || || |||| | || || || | |||| |||||| || || | Sbjct 2975 GTGAAGATGTAACGTGGGGCTGCGTGG-TCGTTACCGAGCTGCT-GCCGCGAGCCGAATT 2918 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || ||| |||| ||||||| ||||||| | ||| ||| ||||| |||| |||| Sbjct 2917 GACCCTCCGGCACGAGCAGGTTGATGTTGTTGCCACCCGTGAAGTTCTGCGCCATCTTCA 2858 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| ||||||| ||| || || ||||| | || | ||||| |||||| | Sbjct 2857 CAATCGTCTCCTGCAGCGACGCCTCGCCATGGTGGAAGGCGGAGACCTCCGAGATGTAGC 2798 Query 152207 CCGCCAACTGCGCCACCTTC 152226 | | || ||||||||||||| Sbjct 2797 CGGACAGCTGCGCCACCTTC 2778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547180437800200