Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq523 269 3e-67 seq1483 143 3e-29 seq424 143 3e-29 seq2938 140 4e-28 seq702 125 8e-24 seq2277 95.1 1e-14 seq307 87.8 2e-12 seq261 86.0 7e-12 >seq523 Length=17530 Score = 269 bits (298), Expect = 3e-67 Identities = 866/1325 (65%), Gaps = 48/1325 (4%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||| | ||||| || ||||||||| ||||||||||| | ||| ||| || |||||| Sbjct 837 GTGAATGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGACGTCGACGCGGTGGGCATC 896 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 ||| ||| || || || || ||||||||| || | | || || | ||| | Sbjct 897 GGGGCGAGCAGGAGGGAGTTGCGCAGGCCGACCTGAACCACCTTCT-GCTTCAGGCTGTC 955 Query 80515 CAAAAATCAACCCCAACGCTGT---GACCC---------CACATGTCGTGCTGCAAGATG 80562 | | || | | |||||| ||| | |||||||| |||||||||| Sbjct 956 CCAGTCCCAGCGAC--CGCTGTTAGGACGCGGGTTCTTCCACATGTCAAACTGCAAGATG 1013 Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622 |||| ||||||| ||| ||| |||||||| ||||| ||| ||| |||| ||| Sbjct 1014 CCCTGGCTCGCCGGACTGCCCTTGAAGGTCTCGTAAGGGCCTTCCTCCTTCGCCAACTCC 1073 Query 80623 CACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-G 80681 |||| || | || || || || ||| |||| || ||||| |||| | Sbjct 1074 ATCGACGCCTCCACCGCGGCAAAGTAGATCGTCTCGAAGATCTCCGCATTCAC-CCGCTG 1132 Query 80682 CGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAAC 80741 ||||| | | |||| | || | || | ||||| | || ||||||||||| || Sbjct 1133 CGCCTCGGCACTGACGAAGGGCAGACGCAGTAGAATGAAGGCATCCGCCAGGCCCTGCAC 1192 Query 80742 GCCGATGGCGATCGGGCGGTGGCGCTTGTTCGAT----CGCTCGGCCTCCGGAATTGGGT 80797 |||| | | | |||||||| |||| |||| | | ||| | | |||| | |||| Sbjct 1193 ACCGAGGCCCACCGGGCGGTTGCGCATGTT-GCTGCGGCGCGCCGTCTCC---ACCGGGT 1248 Query 80798 AAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAA 80857 | |||| || ||||| |||||||||||||| || | | || || | | Sbjct 1249 AGTAGTTGCGGTCAATGACCCGGTTCAGGTTGCGGGTGATCTGCTTCGTGACGCTGTACA 1308 Query 80858 GTTTCTGAAAGTCGAATTGG---TTCCCCT---TCACAAATGCCGGAAGGCTCAGGGACG 80911 | ||| || | | | ||| ||| |||| || ||| ||| | ||| | Sbjct 1309 GCAGCTGGTGATCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAGGGCGATGGAGG 1368 Query 80912 CCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAAT 80971 | || ||||||||||| ||| || | || ||||||||||||||||||||| | Sbjct 1369 CGAGGTTGCACACGGCGGTCTCCTCCGGCGACGTGTACTCGACGATTTCCGTGCACAGGT 1428 Query 80972 TAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGT 81031 | || |||| || || || ||||| |||||||| |||||| |||||| |||||||||| Sbjct 1429 TCGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGTCCTTGT 1488 Query 81032 AGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGC 81091 | ||| ||||| |||||||||| ||| |||| ||||||||| ||| | ||| Sbjct 1489 ACAGAATGAACGGGACGCCGGTCTCGATCTGCGACTCGAGGATGGCAAACCACACCTCCT 1548 Query 81092 GCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCGTCG 81150 |||||| || | || | ||| || ||| | ||||| |||| || | ||| Sbjct 1549 GCGCCTGGATCGTCTGCACGCCGCGGCCCTCTGCCTCGTACTTCTCGTACAGGCGC-TCG 1607 Query 81151 AACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA 81209 |||| | |||| | || ||| | || | |||||| || | ||| |||||| ||| Sbjct 1608 AACTCCTCGCCGTAGCAG-TCACTCAGCCCCGGGCACGCGCTCGGGTCCATCAGCGTCCA 1666 Query 81210 GTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAG 81269 | ||| ||| || ||||||||| ||| |||||||| || ||| ||| || Sbjct 1667 CTTCCCCTCGCTCTTCACTCGCTTCATGAACAGGTCCGGGATCCACAGCGCGTAGAAGAG 1726 Query 81270 GTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGAT 81329 ||| || |||| || || | || |||| | || | |||||| | | ||| Sbjct 1727 GTCACGCGCGCGCTGGTCGTCCTTGCCGGTGTTGCGCTTCAGCAGCAGAAAGCCGAAGAT 1786 Query 81330 GTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTG 81386 ||| |||||||| |||||||| || | ||||| | |||||||| || ||| ||||| Sbjct 1787 GTCGGCATGCCACGGCTCCAGGTAGATGGCGAAGGCACCCTTGCGCTTACCGCCGCCCTG 1846 Query 81387 GTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTG 81446 || |||||||||||||| ||| || ||||||| ||| || | | || | ||| Sbjct 1847 GTCCACGTAACGGGCAGTGTTGTTGAACACACGCAGCATCGGCACCAAGCCGTTGGACGT 1906 Query 81447 ACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGAT 81506 |||||||| || |||| || || ||| | ||| || || ||||| Sbjct 1907 CCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGGACGTGCAGGCCGAT 1966 Query 81507 GCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCG 81564 ||| || | | ||| ||| | | |||| || |||| || || || || || ||| Sbjct 1967 GCCGCCCGCCGCCTTGCTGATGACGGCGCACTCC--TTCAGCGTGTCGTAGATGCCGTCG 2024 Query 81565 ATGCTATCTT-TTTTCA--TGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 ||||| |||| ||| | | |||| ||| | |||| |||||| || | | | Sbjct 2025 ATGCTGTCTTCCTTTGAAGCGACAAGGAAGCACGAGCT---CATCTGCGGCTTCGGCGTG 2081 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 ||||| ||||| || || ||||| ||||| |||| | | | |||||||| || || Sbjct 2082 CCGGCGTTGAAGAGGGTCGGGGTGGCGTGGGTGAAGAAGCCGCGCGACATCAGCTCGTAC 2141 Query 81682 GTTTC 81686 || || Sbjct 2142 GTCTC 2146 >seq1483 Length=4907 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 4103 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 4162 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 4163 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 4222 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || || ||||| || Sbjct 4223 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAAC 4282 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || |||||||| Sbjct 4283 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGG 4329 >seq424 Length=20549 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 20483 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 20424 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 20423 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 20364 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || || ||||| || Sbjct 20363 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAAC 20304 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || |||||||| Sbjct 20303 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTGCGCGGTGG 20257 >seq2938 Length=1608 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || |||||||| ||||||||||| || | || ||||| ||| | | || | || | Sbjct 1607 GTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCCAGCGACACGATCGAG 1548 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || ||||||| || || |||||||||||||| || || || ||||||||||| || || Sbjct 1547 AACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATC 1488 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| || ||||| | || || || || ||||| || |||| ||||| Sbjct 1487 TTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGGAG 1428 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || || |||| || |||||||| Sbjct 1427 TCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 1393 >seq702 Length=13543 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||||| ||||||||||| || | || ||||||||| | | Sbjct 153 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTTGAGGCCAGC 94 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 93 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 34 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 ||||| || || |||||||| ||||| || Sbjct 33 CAGCGCCTGATCTTTGCTGGCAAGCAGCT 5 >seq2277 Length=2457 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| | | |||||||| || ||||| || Sbjct 954 GTGGAGGGCATCTTCTTCTCCGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 895 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 894 CTGATGCCGGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCAC 838 >seq307 Length=25638 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 32052 GAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGC 32111 |||||||||||||||||| |||||| | | ||| | |||| ||||| |||||||| Sbjct 2778 GAAGGTGGCGCAGCTGTCCGGCTACATCTCGGAGGTCTCCGCCTTCCACCATGGCGAGGC 2837 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 |||||| |||| || ||||| || | || |||||||| |||| || ||| | || Sbjct 2838 GTCGCTGCAGGAGACGATTGTGAAGATGGCGCAGAACTTCACGGGTGGCAACAACATCAA 2897 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGT-GGCAAGGATGCTGCGA 32230 | | |||| ||| || || || || | |||| || | | || || || || | Sbjct 2898 CCTGCTCGTGCCGGAGGGTCAATTCGGCTCGCGGC-AGCAGCTCGGTAACGACCACGC-A 2955 Query 32231 GCTCC-CGTTACATCTTCACC 32250 || || ||||||||||||||| Sbjct 2956 GCCCCACGTTACATCTTCACC 2976 >seq261 Length=28860 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 31195 ATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCA-CAAGTCGCACGA 31253 |||| |||||| |||||||| |||||||||||| ||| || | | || | | ||| Sbjct 17204 ATTATGGGAATCCCGAAGCTGGACGACGCCAACGAGGCTGGCGGCAAGCACGGC-CACCG 17146 Query 31254 GTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCT-TGCTATTGCTGGCTTGA 31312 |||||||| ||| | |||||||||||||| || ||| |||| ||| | || ||| | Sbjct 17145 CTGCACGCTCATTCTGACCGAGGGTGACTCCGCCAAGACGCTCTGC-ACGGCCGGCCTCG 17087 Query 31313 GTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTC 31372 || || ||| | ||||| ||||| ||||| || |||||||| | ||||| | Sbjct 17086 CCGTGAAGGACCGCGACTACTTCGGTGTGTTCCCGCTACGTGGCAAGCCCCTCAACGTGC 17027 Query 31373 GTGACGCCTC 31382 | || || || Sbjct 17026 GCGAGGCGTC 17017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570273336952880