Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1483 87.8 1e-12 seq424 87.8 1e-12 >seq1483 Length=4907 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || ||||| || || | ||| || || Sbjct 4320 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 4261 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | ||||| ||||||||||| | |||||| Sbjct 4260 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 4201 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| |||| ||| || || | | Sbjct 4200 TTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCGACCTCGAGCG 4143 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || ||||| | ||| ||||| || ||||||||| || Sbjct 4142 CGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 4099 >seq424 Length=20549 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| || || || |||||| || ||||| || || | ||| || || Sbjct 20266 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 20325 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | ||||| ||||||||||| | |||||| Sbjct 20326 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 20385 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| |||| ||| || || | | Sbjct 20386 TTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCGACCTCGAGCG 20443 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || ||||| | ||| ||||| || ||||||||| || Sbjct 20444 CGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 20487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314709657847367