Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq87 201 1e-46 >seq87 Length=48621 Score = 201 bits (222), Expect = 1e-46 Identities = 467/702 (67%), Gaps = 9/702 (1%) Strand=Plus/Plus Query 34147 GAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAA 34206 ||||| |||||| ||||| || ||| ||||| | ||||| | ||| || | | Sbjct 37235 GAAGGAGGACCGCACCGGCGTCGGCACCATCTCCCTCTTCGGTGCGCAGATGCGTTTCTC 37294 Query 34207 CCTTCGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGT 34263 || || | | | | ||||||||||||||||| ||||| | |||| |||||| Sbjct 37295 GCTGCGAGACAACCAGCTGCCGCTGCTGACGACGAAGCGTGTCTTCTGGCGCGGCGTGTG 37354 Query 34264 CGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGG 34323 ||||||||| | |||||| | | || | |||||| | || ||| || | || Sbjct 37355 CGAGGAGCTTATTTGGTTCCTACGTGGCGAGACGAACGCGCAGTTGCTGGCGGACAAGGA 37414 Query 34324 GGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATC 34383 | | |||||||||| |||| || || || || ||||||| || ||| | | | Sbjct 37415 CATCCACATCTGGGACGGCAACGGCTCACGGGAGTTCCTGGACAGCCGTGGGCTGACGGC 37474 Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 | ||| ||| | ||||| |||||||| ||||||||| | ||||| ||||| || Sbjct 37475 GAACAAAGAGATGGACCTCGGCCCCGTCTACGGCTTCCAGTGGCGTCACTTCGGGGCAGA 37534 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT 34503 |||| ||| ||| ||| |||| ||| | || | ||||||| | || | | | Sbjct 37535 GTATAAGGGCTTCGACGCGAACTACGACGGAGAAGGGGTGGACCAGATCAAGCAGATTGT 37594 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||| ||| | ||| |||||| | || | || | | | |||||||||||| Sbjct 37595 CGAGACCCTCAAGACGAACCCGAACGATCGCCGGCTGCTCTTCACGGCGTGGAACCCGTG 37654 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC----- 34618 | || | | |||||| ||||| || |||||| ||| |||| ||||||||| Sbjct 37655 CGCGCTGCACCAGATGGCACTCCCGCCCTGCCACCTGCTCGGCCAGTTCTACGTCAACAC 37714 Query 34619 GCGAATGG-GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT 34677 || | | ||||||||||||| ||| || || || || | |||||||| | ||||| Sbjct 37715 GCAGACGAAGGAGCTGTCCTGCATGCTGTACCAGCGGTCCTGTGACATGGGTCTCGGGGT 37774 Query 34678 GCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTT 34737 |||||||||||| || ||| | ||||| || | ||||||| | | |||| | Sbjct 37775 GCCGTTCAACATCGCGTCGTACTCGCTGCTGACCATCCTGATCGCAAAGGCGACGGGGCT 37834 Query 34738 GGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 | ||| || ||||||||||| || | || |||||||| ||||| || ||| | || Sbjct 37835 GCGTCCAGGTGAGCTGGTGCACACCCTCGGTGATGCGCACGTCTACAGCAATCACGTGGA 37894 Query 34798 GCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 | | | | |||||| |||| | ||| || | ||||| Sbjct 37895 GGCGTTGAAGCAGCAGCTGGAACGGGTGCCGCGTGCCTTCCC 37936 Score = 201 bits (222), Expect = 1e-46 Identities = 467/702 (67%), Gaps = 9/702 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 ||||| | || ||| | |||| |||||| | | | ||| | ||| || |||| Sbjct 37936 GGGAAGGCACGCGGCACCCGTTCCAGCTGCTGCTTCAACGCCTCCACGTGATTGCTGTAG 37877 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCG 6625 | |||||||| || | || ||||||||||| || ||| || |||| | | ||| Sbjct 37876 ACGTGCGCATCACCGAGGGTGTGCACCAGCTCACCTGGACGCAGCCCCGTCGCCTTTGCG 37817 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 |||| | || ||||| | ||| || ||||||||||||||||| | |||||||| Sbjct 37816 ATCAGGATGGTCAGCAGCGAGTACGACGCGATGTTGAACGGCACCCCGAGACCCATGTCA 37757 Query 6686 CCCGATCGTTGATAGAGCTGGCAGGACAGCTCC-CCATTCGC-----GACGTAGAATTGG 6739 | || || || || ||| ||||||||||||| | | || ||||||||| ||| Sbjct 37756 CAGGACCGCTGGTACAGCATGCAGGACAGCTCCTTCGTCTGCGTGTTGACGTAGAACTGG 37697 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799 | ||| |||||| || ||||| |||||| | | || | |||||||||||| Sbjct 37696 CCGAGCAGGTGGCAGGGCGGGAGTGCCATCTGGTGCAGCGCGCACGGGTTCCACGCCGTG 37637 Query 6800 ATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGG 6859 | | | || | || | |||||| ||| | ||| |||| | | || | |||| Sbjct 37636 AAGAGCAGCCGGCGATCGTTCGGGTTCGTCTTGAGGGTCTCGACAATCTGCTTGATCTGG 37577 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 ||| | || | ||| |||| ||| ||| ||| |||||| ||||| ||||| | | Sbjct 37576 TCCACCCCTTCTCCGTCGTAGTTCGCGTCGAAGCCCTTATACTCTGCCCCGAAGTGACGC 37517 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979 |||||||| |||||||| ||||| | ||| ||| | | | | ||| || || Sbjct 37516 CACTGGAAGCCGTAGACGGGGCCGAGGTCCATCTCTTTGTTCGCCGTCAGCCCACGGCTG 37457 Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039 ||||| || || || || |||| |||||||||| | | || | || ||| | Sbjct 37456 TCCAGGAACTCCCGTGAGCCGTTGCCGTCCCAGATGTGGATGTCCTTGTCCGCCAGCAAC 37397 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 | | |||||| | || | | |||||| | ||||||||| |||||| |||| | Sbjct 37396 TGCGCGTTCGTCTCGCCACGTAGGAACCAAATAAGCTCCTCGCACACGCCGCGCCAGAAG 37337 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAA---ATTCGCCCCGAAGGTTGTATCGGGCCTGTGTG 7156 ||||| ||||||||||||||||| | | | | || || | | || ||| | Sbjct 37336 ACACGCTTCGTCGTCAGCAGCGGCAGCTGGTTGTCTCGCAGCGAGAAACGCATCTGCGCA 37277 Query 7157 CCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTC 7198 ||||| | ||||| ||| || ||||| |||||| ||||| Sbjct 37276 CCGAAGAGGGAGATGGTGCCGACGCCGGTGCGGTCCTCCTTC 37235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448233268547280