Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq133 114 1e-20 seq87 102 7e-17 >seq133 Length=39883 Score = 114 bits (126), Expect = 1e-20 Identities = 136/180 (76%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 53497 CAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTT-TGCATCCTTCA 53555 |||||||| | | | ||| || | ||| | || ||||||||||| |||| || || Sbjct 4483 CAAGGTGAAGATCCGCACCATCAAGATCCCCAACATCGGCGACAAGTTCTGCAGCCGGCA 4542 Query 53556 CGGCGCAAAAGGGGACATGCGGAG--CGGTCCTGACTCAGGAGGACATGCCCTTCGACAA 53613 ||| ||| ||||| || ||| | || | | | ||||||||||||||||| || Sbjct 4543 CGG-GCAGAAGGGCACCAACGGCATTCAGTTCCGCC--AGGAGGACATGCCCTTCAACCG 4599 Query 53614 GGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACGGT 53673 ||||| || ||||| |||||||||||||||||||||||| |||||||| | |||||||| Sbjct 4600 CGACGGCGTCGTGCCGGACCTCATCATCAACCCCCACGCCATTCCCTCCCGCATGACGGT 4659 >seq87 Length=48621 Score = 102 bits (112), Expect = 7e-17 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 ||| ||| || ||||| | ||| || |||||||| | ||||||||| ||||| Sbjct 37924 GGCACCCGTTCCAGCTGCTGCTTCAACGCCTCCACGTGATTGCTGTAGACGTGCGCATCA 37865 Query 29684 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29743 || |||||||| || | ||| || || ||||| || | | || |||| | || Sbjct 37864 CCGAGGGTGTGCACCAGCTCACCTGGACGCAGCCCCGTCGCCTTTGCGATCAGGATGGTC 37805 Query 29744 AGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGG 29803 || || ||||| |||||||| || ||||||||||| |||||||| | |||| |||| Sbjct 37804 AGCAGCGAGTACGACGCGATGTTGAACGGCACCCCGAGACCCATGTCACAGGACCGCTGG 37745 Query 29804 TAGAGCTGGCACGAGAGCT-CTCCGTC-----GCTCACGTAAAACTGACACATGGCA--T 29855 || ||| ||| || |||| || |||| | | ||||| ||||| | | ||| | Sbjct 37744 TACAGCATGCAGGACAGCTCCTTCGTCTGCGTGTTGACGTAGAACTGGCCGA--GCAGGT 37687 Query 29856 GGCACGGAGGAAGGGCCAT 29874 |||| || || || ||||| Sbjct 37686 GGCAGGGCGGGAGTGCCAT 37668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406137464357314