Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1483 188 1e-42 seq424 188 1e-42 seq2938 170 4e-37 seq702 107 4e-18 seq2277 91.5 3e-13 >seq1483 Length=4907 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||| || || |||||||||||||| ||| Sbjct 4329 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 4270 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 4269 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 4210 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 4209 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 4150 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 4149 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 4103 >seq424 Length=20549 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||| || || |||||||||||||| ||| Sbjct 20257 CCACCGCGCAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 20316 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 20317 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 20376 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 20377 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 20436 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 20437 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 20483 >seq2938 Length=1608 Score = 170 bits (188), Expect = 4e-37 Identities = 168/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||||||| || || || || | ||| || || |||||||||||||| || Sbjct 1392 ACCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 1451 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||||||||||| || || ||||| ||| Sbjct 1452 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 1511 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| Sbjct 1512 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCGAC 1571 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| | ||||||||| || |||| ||||| ||| Sbjct 1572 CTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 1608 >seq702 Length=13543 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || || |||||||||| || || ||||| ||| || ||||||||||| ||| Sbjct 5 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 64 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || ||| | ||||| ||||| || || || ||||| | ||||||||| Sbjct 65 ATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCAACCTCGAGCGCGATCGTCTTG 124 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||| ||||| ||||| || ||||| Sbjct 125 CCGGTCAGCGTCTTCACGAAGATTTGCAT 153 >seq2277 Length=2457 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || ||| | Sbjct 738 GAGTTCATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 679 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| ||| ||||| || Sbjct 678 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 619 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 || | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 618 CACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 559 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||| ||| ||| |||| || || | | | ||||| Sbjct 558 TTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCGGGTGT 521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046669474412146