Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1483 138 8e-28 seq424 138 8e-28 seq2938 132 3e-26 seq702 105 5e-18 >seq1483 Length=4907 Score = 138 bits (152), Expect = 8e-28 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| || || || ||| | || || Sbjct 4312 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 4253 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||| || | || | || ||||| ||| Sbjct 4252 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 4193 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| |||| | || |||||| | || ||||| | || ||||||| Sbjct 4192 GATCTTCGCCTTCAC-GTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCT 4134 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || || |||||||||||||| |||||| || Sbjct 4133 TGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 4099 >seq424 Length=20549 Score = 138 bits (152), Expect = 8e-28 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| || || || ||| | || || Sbjct 20274 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 20333 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||| || | || | || ||||| ||| Sbjct 20334 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 20393 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | || |||||| | || ||||| | || ||||||| Sbjct 20394 GATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGCGCGATCGTCT 20452 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || || |||||||||||||| |||||| || Sbjct 20453 TGCCGGTCAGCGTCTTCACGAAGATCTGCATGGTG 20487 >seq2938 Length=1608 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| ||||| |||||| ||||||||||| || ||| Sbjct 1393 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 1452 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||||||||||| |||||||| || | || Sbjct 1453 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 1512 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| |||| | |||| | || |||||| || || || Sbjct 1513 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTGGCCTCGAC 1571 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 ||| | || |||||||| || || || ||||||||| Sbjct 1572 CTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACG 1608 >seq702 Length=13543 Score = 105 bits (116), Expect = 5e-18 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||||| |||||||| || | || | || ||||| ||| Sbjct 4 CAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 63 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| |||| | || |||||| || || ||||| | || ||||||| Sbjct 64 GATCTTCGCCTTCAC-GTTCTCGATCGTGTCGCTGGCCTCAACCTCGAGCGCGATCGTCT 122 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || ||||||||||||||||||||| Sbjct 123 TGCCGGTCAGCGTCTTCACGAAGATTTGCATG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359967589995783