Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20acanthocephali_20[genbank_20GCA_5F000482105.1_202013-10- 25] 5,199 sequences; 33,783,172 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1483 140 8e-28 seq424 140 8e-28 seq2938 127 5e-24 seq702 111 4e-19 >seq1483 Length=4907 Score = 140 bits (154), Expect = 8e-28 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| | |||||||| || ||| Sbjct 4106 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC--- 4162 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 4163 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 4222 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || || || | || ||||| || || ||| Sbjct 4223 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAAC 4282 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 4283 ATCCAGAAGGAGTCGACGCTGCACCTGGT 4311 >seq424 Length=20549 Score = 140 bits (154), Expect = 8e-28 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || || || || |||||| | |||||||| || ||| Sbjct 20480 CAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC--- 20424 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||||||||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 20423 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 20364 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || ||||| || || || | || ||||| || || ||| Sbjct 20363 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAAC 20304 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 20303 ATCCAGAAGGAGTCGACGCTGCACCTGGT 20275 >seq2938 Length=1608 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 177932 CGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGA 177991 |||||| || || || || || |||||| | |||||||| || | ||||| ||||| Sbjct 1608 CGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTCGAGGCCAGCGACACGATCGA 1549 Query 177992 GAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTAT 178051 |||||| || ||||| |||||||| || || ||||| ||||||||||| || || || Sbjct 1548 GAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGAT 1489 Query 178052 CTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 ||| ||||| || ||||| || || || | || || || || || ||| |||| || || Sbjct 1488 CTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAACATCCAGAAGGA 1429 Query 178112 ATCAACACTGCATCTTGT 178129 || || ||||| || || Sbjct 1428 GTCGACGCTGCACCTCGT 1411 >seq702 Length=13543 Score = 111 bits (122), Expect = 4e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || |||||| | |||||||| || | ||| Sbjct 150 CAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTTGAGGCCAGCGAC 91 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| |||||||| || || ||||| ||||||||||| Sbjct 90 ACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 31 Query 178044 CGACTTATCTTCGCCGGAAAACAGCT 178069 || || ||||| || || || ||||| Sbjct 30 CGCCTGATCTTTGCTGGCAAGCAGCT 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203651016831606