Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq747 102 2e-16 seq1439 96.9 7e-15 seq1438 96.9 7e-15 seq1113 96.9 7e-15 seq910 96.9 7e-15 seq990 93.3 9e-14 >seq747 Length=17186 Score = 102 bits (112), Expect = 2e-16 Identities = 232/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 |||||||| || | | | ||||||||||| || |||||||| | | || |||||| Sbjct 6342 GTGAAGATGTAACGTCCCGCGGCGTGGTCTTTGCCGCCCTGCAGGCGTGTACCGAACTGA 6283 Query 281802 CCCTCCG-GCA-ACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGA 281859 || ||| || | || | | | ||| ||||| || || | ||||| |||| | || Sbjct 6282 CCATCCTTGCGCAGAAGCGGG--ACGTTGTTGCTGCCAACAAAGTCCTGCGCCATGGCGA 6225 Query 281860 CGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAAC 281919 | || ||| | |||||| |||||||||||| |||||| || || | || || | Sbjct 6224 CAATGGTCTGCACAAGCGACTGCTCACCGTGGTGGTAGGCGGAATGCTCCGAGACGTAGC 6165 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAG-TTGCGTTTGAAAGCGCAATATAAT 281978 | || ||| ||||||| | | | || |||| ||||||||||| | | | | | Sbjct 6164 CGGAGAGCTGCACTACCTTGATGGA-GTTGACAAGGTTGCGTTTGAAGCAGGAGAAGAGT 6106 Query 281979 ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCA 282038 | |||||| || ||||||||| ||||||| | | |||||||||||| || || Sbjct 6105 ATTTTTCGCTGGCCAGGCTTGAAGCCATCAATGGCGCTCGGAATGCTGCGCTC----GCA 6050 Query 282039 TACCGC----GAGAACAAAATAAGTTCCTTGTCAATGAAGTC 282076 |||| ||||| | ||| | |||||||| | ||||| Sbjct 6049 GTCCGCGATGGAGAAGAGAATCAACTCCTTGTCCACAAAGTC 6008 >seq1439 Length=11893 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 268 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 209 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 208 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 149 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 148 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 89 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 88 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 46 >seq1438 Length=1320 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 268 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 209 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 208 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 149 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 148 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 89 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 88 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 46 >seq1113 Length=1237 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 532 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 473 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 472 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 413 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 412 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 353 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 352 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 310 >seq910 Length=2952 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 2247 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 2188 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 2187 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 2128 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 2127 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 2068 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 2067 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 2025 >seq990 Length=33815 Score = 93.3 bits (102), Expect = 9e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 281731 GGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCG 281790 || |||| || || ||||| || | || |||||||| |||| |||| | | | Sbjct 23151 GGCTCAGCTTTGTAAAGATGTAGCGTGGTGCGGCGTGGTCGCTACCGAGCTGCTGACGTG 23210 Query 281791 ACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAG 281850 | || |||||||||||||||| | | ||||||||| |||| ||| | | | ||| | Sbjct 23211 AGCCGAACTGACCCTCCGGCACGAGCAGGTTAATGTTGTTGCCGCCGGTGAAGTTCTGTG 23270 Query 281851 CCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGC 281899 ||| || ||||| ||| ||||||| || ||||| |||||||| |||| Sbjct 23271 CCATCTTCACGATCGTCTCCTGAAGAGACACCTCGCCGTGGTGGAAGGC 23319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057778826617790