Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1439 120 7e-22 seq1438 120 7e-22 seq1113 120 7e-22 seq910 120 7e-22 seq2051 86.0 1e-11 >seq1439 Length=11893 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 65 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 124 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 125 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 182 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 183 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 242 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 243 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 301 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 302 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 361 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 362 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 418 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 419 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 478 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 479 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 534 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 535 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 583 >seq1438 Length=1320 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 65 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 124 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 125 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 182 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 183 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 242 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 243 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 301 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 302 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 361 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 362 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 418 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 419 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 478 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 479 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 534 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 535 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 583 >seq1113 Length=1237 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 329 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 388 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 389 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 446 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 447 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 506 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 507 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 565 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 566 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 625 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 626 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 682 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 683 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 742 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 743 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 798 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 799 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 847 >seq910 Length=2952 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 2044 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 2103 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 2104 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 2161 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 2162 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 2221 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 2222 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 2280 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 2281 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 2340 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 2341 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 2397 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 2398 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 2457 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 2458 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 2513 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 2514 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 2562 >seq2051 Length=41476 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/170 (73%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 253995 GGCGACCTT-CCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 ||||| | | || || || || ||||||||||| ||||| || |||||||| || |||| Sbjct 29842 GGCGAACATGCCACACTTCCTCTTCCACGGTCCCCCCGGCACCGGCAAGACAACATCCAT 29783 Query 254054 CCTGGCGCTGGCCC--GAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAG 254111 ||| || |||| | |||| | | |||| | | ||| | ||||||| |||| Sbjct 29782 CCTCGCTGTGGCACACGAACTAT-TCGGGCCCGATTA-CATTCGCAGCCGCGTGCGCGAG 29725 Query 254112 CTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA 254161 |||||||| || ||||| |||||| | |||| || || || |||||||| Sbjct 29724 CTGAACGCGTCCGACGACCGCGGGATCAACGTGGTGCGAGAAAAGATCAA 29675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073720545812544