Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1890 82.4 8e-11 >seq1890 Length=30326 Score = 82.4 bits (90), Expect = 8e-11 Identities = 220/332 (66%), Gaps = 7/332 (2%) Strand=Plus/Plus Query 157481 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCT 157537 |||||| |||||||| |||| ||||| || ||| ||||| ||||| |||||| Sbjct 24265 ATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCGCTTACCGCCACCC 24324 Query 157538 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 157597 || ||||||| || | | || || || || |||||||| |||| || || | | Sbjct 24325 TGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTACCAAACCATTTGAC 24384 Query 157598 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCA 157657 ||||| ||||| || | |||| | | ||| | | ||| ||| | ||| ||| Sbjct 24385 GTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATGTTGTGCACATGCAAACCA 24444 Query 157658 ATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGA 157717 || |||||| | || ||| | ||| || || || | ||| | ||||| || | Sbjct 24445 ATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTATCGTAGATACCATCA 24504 Query 157718 ATGCTATCG-CTTTCCATGGTCAAT-AGAAAACATGAACTCATCTGCGGAGTCAGACTGC 157775 || || || | ||| | | ||| || || || || ||||||||||| || | ||| Sbjct 24505 ATACTGTCTTCCTTCGACG--CAACGAGGAAGCAAGAGCTCATCTGCGGCTTCGGCGTGC 24562 Query 157776 CGGCAGCGAACATGGTTGGGCTTGCGTGCGTG 157807 | || ||| | ||| ||| | ||||||||| Sbjct 24563 CAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTG 24594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506993276512560