Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1185 86.0 6e-12 seq1110 82.4 7e-11 seq1089 82.4 7e-11 seq954 82.4 7e-11 >seq1185 Length=29681 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||||||||| || | || |||| ||| | ||||| || || ||||| || | ||| || Sbjct 29447 TTACACTCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTA 29506 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || | ||| | ||||||||||| || ||| | ||||| | | ||||| || Sbjct 29507 GTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 29566 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || || || || || ||||| | || || ||||| ||| ||| ||||| || | Sbjct 29567 CGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTCG 29625 Query 94954 -GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || | || ||| || || || || || || ||||| |||||||||||| Sbjct 29626 CCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 29681 >seq1110 Length=30512 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 21115 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 21056 >seq1089 Length=36823 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 193 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 134 >seq954 Length=72456 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 216 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448272523067880