Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1890 251 2e-61 >seq1890 Length=30326 Score = 251 bits (278), Expect = 2e-61 Identities = 523/772 (68%), Gaps = 14/772 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| || || || | | ||| ||||| || | || || |||||| ||| Sbjct 24596 TTCACGCACGCTACCCCGACCCTCTTCAACGCTGGCACGCCGAAGCCGCAGATGAGCTCT 24537 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | |||||| || || || ||||||| || ||||| ||| | Sbjct 24536 TGCTTCCTCGTTGCGTCGAAGGAAGACAGTATTGATGGTATCTACGATACACTGAAGGAG 24477 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGC 363725 ||||| | || |||| ||| ||||| |||||| | | ||||| |||| | | Sbjct 24476 TGTGCCGTCATCAGCAAGGCTGCCGGCGGCATTGGTTTGCATGTGCACAACATTCGCTCC 24417 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | ||| ||||| |||||| || || ||||| |||| |||||||| || Sbjct 24416 GCCGG-CAGCTACATCGCCGGCACGAATGGCACGTCAAATGGTTTGGTACCCATGCTGCG 24358 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| || || | ||||| ||||||||||| || ||||||||||| || || Sbjct 24357 TGTCTTCAACAACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAAGGTGCCTT 24298 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA--- 363902 ||| ||||||| ||||| || ||||| || || | |||||| ||| | ||| Sbjct 24297 TGCCGTGTATCTTGAGCCGTGGCACGCCGACATCTTCGGGTTTCT---GCTGCTGAAGCG 24241 Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||||| || || || || ||||||||| || |||||||| || || ||| || | || Sbjct 24240 TAACACCGGCAAGGACGACCAGCGTGCACGCGACCTGTTCTACGCGCTGTGGATTCCCGA 24181 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 || || |||||||| ||| || | | ||| ||| | || | ||| | || Sbjct 24180 CCTCTTCATGAAGCGTGTGAAGTCGGAGGGGAAGTGGACGCTGATGGACCCGAGCACCTG 24121 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 ||||||||| ||| | || || || | | ||| || || || || | Sbjct 24120 TCCAGGTCTCAGCGACTGCTACGGCGAGGAGTTCGAGCGTCTGTATGAGCGTTACGAGGC 24061 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 |||||| | | |||| |||| || ||| || | ||||| |||||| | || || Sbjct 24060 GGAGGGCCGCGGTGTGCAGACGATTCAGGCGCAGGAGGTGTGGTTCGCCATCCTCGAGTC 24001 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||||| |||||||| || | || | ||||| ||| |||||||| | ||||| || Sbjct 24000 GCAGATCGAGACAGGCGTGCCGTTCATCCTTTACAAGGATGCGTGCAACAGTAAGTCAAA 23941 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATA 364259 |||| || |||| || || | ||| || || ||||| || || |||||| | || || Sbjct 23940 CCAGAAGAACCTCGGCACCA-TCA--AGTGCTCGAACCTGTGCACGGAGATTGTCGAGTA 23884 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 |||| | || || ||||| || || || ||||| || || ||||| || ||| Sbjct 23883 CACCTCGCCAGAGGAGACGGCGGTGTGCAACCTCGCCTCCATCGCCCTGCCG 23832 Score = 84.2 bits (92), Expect = 6e-11 Identities = 266/410 (65%), Gaps = 2/410 (0%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 ||||| |||||||| || || || | ||||| || || ||||| ||||||||||| || Sbjct 23381 GCGCCGATGCCCACTGCGTCCACCTCGCAGATTCTTGGCAACAATGAGTGCTTCGAGCCC 23322 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 || || || | || ||||| || || ||| || || ||||| || || ||| Sbjct 23321 TTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGCGGCGAGTTCCCGGTCGTGAACAAG 23262 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 ||||| || | ||| || | | || || |||||| ||| | |||| ||| | ||| Sbjct 23261 TACCTTGTGATGGACCTCATCAAGCGAGGCCTGTGGAATGAAACCATGCGCAACGAGATC 23202 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 ||| || || || || | | || ||| || |||| || || |||||| | Sbjct 23201 ATCACCTTCAACGGCTCCATCCTGACGATTGACGGTATTCCGGACGACCTGAAGGAGCTC 23142 Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 ||| || || ||||| || | ||| | || ||||| ||||| ||| || || Sbjct 23141 TACCGTACGGTGTGGGAGATCCCGCAGCGCAAGCTGATTGACATGGCCCGCGACCGTGGC 23082 Query 365050 GCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG-CCAACCTCCGCCAA 365108 | ||| || ||||||| | || | || || | || || ||||| | | | Sbjct 23081 CAGTACATCGACCAATCCCAGTCGCTGAATCTGTTTTTG-CAGAGCCCCACCTCTGGCCA 23023 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGTG 365158 | || || |||| |||||| |||| | || || || ||||| |||| Sbjct 23022 AATCACGTCGATGCTCTTCTACACGTGGGAGTCGGGGCTCAAGACGGGTG 22973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303297941506406