Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1890 114 1e-20 seq1185 86.0 5e-12 >seq1890 Length=30326 Score = 114 bits (126), Expect = 1e-20 Identities = 262/389 (67%), Gaps = 13/389 (3%) Strand=Plus/Plus Query 129990 CATCAAACTCCACATTCCATCCG-CTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 ||||| ||||| | || |||| |||| || || ||||| || | ||||| | ||||| Sbjct 24135 CATCAGCGTCCACTTCCCCTCCGACTTC-ACACGCTTCATGAAGAGGTCGGGAATCCACA 24193 Query 130049 GGGCGTACAACAAATCTCG----CGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 | ||||| |||| || || |||| || |||| | || ||||||| ||||| Sbjct 24194 GCGCGTAGAACAGGTCGCGTGCACGCTGGTCG-TCCTTG---CCGGTGTTACGCTTCAGC 24249 Query 130105 TCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTC 130164 || || || | ||||||||||||||||| |||| ||| | || | || || || Sbjct 24250 AGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTG 24309 Query 130165 CGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCC 130221 || || ||| || ||||| |||| ||| ||| |||||| |||| |||| ||| | Sbjct 24310 CGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGT 24369 Query 130222 TCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTA 130281 |||| || || | |||||| || |||| | ||| | ||||| | |||| ||| Sbjct 24370 ACCAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATGTTG 24429 Query 130282 TGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTT 130341 || || | ||| ||||||||| || || || | || || || || || Sbjct 24430 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 24489 Query 130342 TCATAAATGCCAACGATACTGTCTTCTTT 130370 || || || ||| | ||||||||||| || Sbjct 24490 TCGTAGATACCATCAATACTGTCTTCCTT 24518 >seq1185 Length=29681 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 29680 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 29621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 29620 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 29561 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 29560 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 29501 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 29500 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 29454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419710950255145