Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1439 118 2e-21 seq1438 118 2e-21 seq1113 118 2e-21 seq910 118 2e-21 seq747 96.9 7e-15 >seq1439 Length=11893 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 84 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 143 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 144 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 203 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 204 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 263 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 264 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 323 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 324 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 381 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 382 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 439 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 440 CCAGAACAGCGCGCAGAACGACCCCGAGAA 469 >seq1438 Length=1320 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 84 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 143 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 144 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 203 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 204 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 263 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 264 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 323 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 324 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 381 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 382 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 439 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 440 CCAGAACAGCGCGCAGAACGACCCCGAGAA 469 >seq1113 Length=1237 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 348 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 407 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 408 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 467 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 468 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 527 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 528 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 587 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 588 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 645 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 646 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 703 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 704 CCAGAACAGCGCGCAGAACGACCCCGAGAA 733 >seq910 Length=2952 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 2063 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 2122 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 2123 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 2182 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 2183 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 2242 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 2243 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 2302 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 2303 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 2360 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 2361 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 2418 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 2419 CCAGAACAGCGCGCAGAACGACCCCGAGAA 2448 >seq747 Length=17186 Score = 96.9 bits (106), Expect = 7e-15 Identities = 178/259 (69%), Gaps = 14/259 (5%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||| | ||||| ||||| |||| || ||||| || Sbjct 6008 GACTTTGTGGACAAGGAGTTGATTCTCTTCTCCATCGCGGACTGC----GAGCGCAGCAT 6063 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||| | |||||| ||||||| ||||| || || ||||| || ||||| Sbjct 6064 TCCGAGCGCCATTGATGGCTTCAAGCCTGGCCAGCGAAAAATACTCTTCTCCTGCTTCAA 6123 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 || ||||| || | || ||||| | ||| | || || || || || || ||| Sbjct 6124 ACGCAACCTTGTCAACTCCATCAAGGTAGTGCAGCTCTCCGGCTACGTCTCGGAGCATTC 6183 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||||||||| | | ||||| ||||||| | |||||| ||||| Sbjct 6184 CGCCTACCACCACGGTGAGCAGTCGCTTGTGCAG---ACCATTGTCGCCATGGCGCAGGA 6240 Query 218751 CTATGTGGGCAGTAACAAC 218769 || ||| ||||| |||||| Sbjct 6241 CTTTGTTGGCAGCAACAAC 6259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027792907193053