Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1439 86.0 1e-11 seq1438 86.0 1e-11 seq1113 86.0 1e-11 seq910 86.0 1e-11 >seq1439 Length=11893 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 484 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 425 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 424 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 367 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 366 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 308 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 307 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 248 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 247 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 188 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 187 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 128 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 127 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 80 >seq1438 Length=1320 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 484 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 425 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 424 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 367 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 366 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 308 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 307 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 248 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 247 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 188 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 187 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 128 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 127 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 80 >seq1113 Length=1237 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 748 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 689 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 688 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 631 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 630 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 572 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 571 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 512 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 511 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 452 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 451 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 392 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 391 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 344 >seq910 Length=2952 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 2463 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 2404 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 2403 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 2346 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 2345 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 2287 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 2286 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 2227 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 2226 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 2167 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 2166 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 2107 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 2106 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 2059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102832902543550