Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1890 156 5e-33 seq1439 114 2e-20 seq1438 114 2e-20 seq1113 114 2e-20 seq910 114 2e-20 seq2758 82.4 9e-11 >seq1890 Length=30326 Score = 156 bits (172), Expect = 5e-33 Identities = 1069/1700 (63%), Gaps = 57/1700 (3%) Strand=Plus/Plus Query 113588 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 113647 ||||| | || |||||||||| ||||||||||||||| || ||| | || | || Sbjct 22951 GCCTTGGTGCGCAGGTAGTACACACCCGTCTTGAGCCCCGACTCCCACGTGTAGAAGAGC 23010 Query 113648 ATCGAGGACAACTTGG--AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATT 113705 ||||| | | |||| |||| || || || | || || || |||| ||||||| Sbjct 23011 ATCGACGTGAT-TTGGCCAGAG-GTGGGGCTCTGCAAAAACAGATTCAGCGACTGGGATT 23068 Query 113706 GATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCC 113765 | |||||| | | ||||| || ||||| ||||||| | | | ||| |||| Sbjct 23069 GGTCGATGTACTGGCCACGGTCGCGGGCCATGTCAATCAGCTTGCGCTGCGGGATCTCCC 23128 Query 113766 ACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGC 113825 |||| || | |||||| | ||| | || || || ||| | | || | ||||||||| Sbjct 23129 ACACCGTACGGTAGAGCTCCTTCAGGTCGTCCGGAATACCGTCAATCGTCAGGATGGAGC 23188 Query 113826 CACCCGCCTTGACCATGA-GATCC---TTCATATCCTTTGA--CCAGAGACCAATCTTTT 113879 | |||| ||| |||| | | || ||| | ||| || || ||| Sbjct 23189 CG------TTGAAGGTGATGATCTCGTTGCGCATGGTTTCATTCCACAGGCCTCGCTTGA 23242 Query 113880 TGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 113939 |||| ||| ||| || | ||| || || || ||||| || || || | | Sbjct 23243 TGAGGTCCATCACAAGGTACTTGTTCACGACCGGGAACTCGCCGCTCAGCACACGGCGGA 23302 Query 113940 GATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGG 113999 ||||| || | ||| | ||||| |||||||||||||| || | || || | ||||| Sbjct 23303 CGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGAGGTGG 23362 Query 114000 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC--CTTTTCCCTAATGCG 114057 | || |||||||| || || | || || ||| || | ||| | | || | | Sbjct 23363 ACGCAGTGGGCATCGGCGCAACCAGCAGCGAGTTCCGCATACCGACCTGCACCACCTTC- 23421 Query 114058 TTCCTTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTGCCACATAT 114110 ||||||||| ||||||||| || | ||| | || | || |||||| | Sbjct 23422 -TCCTTGAGGCTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGT 23479 Query 114111 CAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAA 114170 | || || || || || ||| || || |||| || || ||||| |||||||| Sbjct 23480 CGAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGGGCCCTCCT 23539 Query 114171 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 114230 ||| |||| || |||||| | || || || || ||||| || || | Sbjct 23540 CCTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAAGATCTCCG 23599 Query 114231 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 114290 | |||| || |||||| || |||||| || || || ||| || |||||| Sbjct 23600 CGTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAACGCATCCG 23659 Query 114291 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 114350 | || || || || || | ||| | || || | | |||||| || || |||| Sbjct 23660 CCAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTGCTGCGGCGCGCCGTCT 23719 Query 114351 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 | || || || | || | || || || | ||| || || |||| ||| |||| Sbjct 23720 CAACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGATTTGCTTCGTGA 23779 Query 114411 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 | ||| | || || | ||| |||| || || || | || |||| Sbjct 23780 CGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAGGG 23839 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 |||| || || || || ||||| | ||||| || |||||||| | ||| |||| Sbjct 23840 CGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACAATCTCCG 23899 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 | |||| || || | ||| |||||||| | |||||| || |||||||| |||| |||| Sbjct 23900 TGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTGTTGCACG 23959 Query 114591 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 114650 ||||||||||||| ||| | ||| || ||||| | || |||| ||| || || || Sbjct 23960 CATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAACC 24019 Query 114651 AGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 114709 | || | | ||| || | | || | || |||||| ||||||| || Sbjct 24020 ACACCTCCTGCGCCT-GAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAACGCTCATAC 24078 Query 114710 AGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGA---GCCCTGGTGCCTTATCTGGGC 114764 || || ||||| || || | | | |||||| | | ||||| || ||| Sbjct 24079 AGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGC----TC-GGGT 24133 Query 114765 AGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGA 114824 | || | ||| | || || || |||||||||||||||||||| || ||||| | Sbjct 24134 CCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATCCACA 24193 Query 114825 GAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTC 114882 | || |||| || || || || ||| || || | || || | || | Sbjct 24194 GCGCGTAGAACAGGTCGCG--TGCACGCTGGTCGTCCTTGCCGGTGTTACGCTTCAGCAG 24251 Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 114942 || ||| | | ||| || ||||||||||| || || ||||| || | | || || || Sbjct 24252 CAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCG 24311 Query 114943 ---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAAT 114999 || ||| |||||| || || | || ||| || || || || ||||| || | Sbjct 24312 CTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTAC 24371 Query 115000 GATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCA 115057 | ||||| || |||||| || || ||| || | | || | | | Sbjct 24372 CAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGAATGTTG 24429 Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117 || | |||| |||||| || || || ||| ||| || |||||| | || | Sbjct 24430 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 24489 Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC---AGCTCGACATT 115174 ||||||| || || || ||| |||| || | ||||||| |||| ||| Sbjct 24490 TCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCT---CATC 24546 Query 115175 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 115234 || ||| | || || ||||||||||||||||| || || ||||| |||| | ||| | Sbjct 24547 TGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTC 24606 Query 115235 GACATCTTATCGTAGGTCTC 115254 |||||| ||||| ||||| Sbjct 24607 GACATCAGCTCGTACGTCTC 24626 >seq1439 Length=11893 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 368 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 427 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 428 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 487 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 488 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 544 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 545 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 586 >seq1438 Length=1320 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 368 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 427 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 428 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 487 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 488 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 544 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 545 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 586 >seq1113 Length=1237 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 632 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 691 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 692 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 751 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 752 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 808 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 809 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 850 >seq910 Length=2952 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 2347 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 2406 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 2407 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 2466 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 2467 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 2523 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 2524 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 2565 >seq2758 Length=30615 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839 |||||||||||||| |||||| || || || ||||| |||||||||||||| ||||| || Sbjct 28219 GATCTTACGATCAATGCGACCCGGACGCAGCAGGGCCTCGTCAAGGATATCCATGCGATT 28160 Query 10840 CGTCGCCGCGATGAC 10854 |||||| ||| || Sbjct 28159 GGTCGCCATGATCAC 28145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597328712755640