Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1890 163 3e-35 >seq1890 Length=30326 Score = 163 bits (180), Expect = 3e-35 Identities = 494/758 (65%), Gaps = 10/758 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || ||||||||||| |||||||| || || ||| ||| |||||| || || ||||| Sbjct 24587 GCTACCCCGACCCTCTTCAACGCTGGCACGCCGAAGCCGCAGATGAGCTCTTGCTTCCTC 24528 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || |||| ||| || || || | ||| | || ||||| ||||| | Sbjct 24527 GTTGCGTCGAAGGAAGACAGTATTGATGGTATCTACGATACACTGAAGGAGTGTGCCGTC 24468 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || || || | ||| ||| || | || || || | Sbjct 24467 ATCAGCAAGGCTGCCGGCGGCATTGGTTTGCATGTGCACAACATTCGCTCCGCCGGCAGC 24408 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| || |||||||| || || || | || || ||||| || ||||||||| Sbjct 24407 TACATCGCCGGCACGAATGGCACGTCAAATGGTTTGGTACCCATGCTGCGTGTCTTCAAC 24348 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||||||||||||||| || | | | || ||| | || || || ||| Sbjct 24347 AACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAAGGTGCCTTTGCCGTGTAT 24288 Query 94192 CTCGAGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGCGAAAG---AACCACGG 94247 || ||||| |||||||| ||| | || |||| |||| ||| ||| ||| Sbjct 24287 CTTGAGCCGTGGCACGCCGACATCTTCGGGTTTC----TGCTGCTGAAGCGTAACACCGG 24232 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 ||| || || | || | ||||| |||||||| || ||| | || ||||| || || Sbjct 24231 CAAGGACGACCAGCGTGCACGCGACCTGTTCTACGCGCTGTGGATTCCCGACCTCTTCAT 24172 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGA-ATGTCCCGGAC 94366 ||| || || || | |||| | | | | ||| | | ||||| || | Sbjct 24171 GAAGCGTGTGAAGTCGGAGGGGAAGTGGACGC-TGATGGACCCGAGCACCTGTCCAGGTC 24113 Query 94367 TGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCA 94426 | |||| | || | || || |||||| |||||||| || ||||| Sbjct 24112 TCAGCGACTGCTACGGCGAGGAGTTCGAGCGTCTGTATGAGCGTTACGAGGCGGAGGGCC 24053 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | || || | || | || ||||| ||| | || ||| | | Sbjct 24052 GCGGTGTGCAGACGATTCAGGCGCAGGAGGTGTGGTTCGCCATCCTCGAGTCGCAGATCG 23993 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||| || ||| | |||| | | |||||| | |||| ||||| |||||| || Sbjct 23992 AGACAGGCGTGCCGTTCATCCTTTACAAGGATGCGTGCAACAGTAAGTCAAACCAGAAGA 23933 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 ||||||| |||||| ||||||| |||||||| |||||||||||||| || || || | Sbjct 23932 ACCTCGGCACCATCAAGTGCTCGAACCTGTGCACGGAGATTGTCGAGTACACCTCGCCAG 23873 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTG 94644 | |||| || ||||| ||||| | ||||||| |||| Sbjct 23872 AGGAGACGGCGGTGTGCAACCTCGCCTCCATCGCCCTG 23835 Score = 127 bits (140), Expect = 2e-24 Identities = 199/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| ||||||| || || || |||||||| || ||||| ||||||| ||||||||||| Sbjct 23396 AACTCGCTGCTGGTTGCGCCGATGCCCACTGCGTCCACCTCGCAGATTCTTGGCAACAAT 23337 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| ||||||||||| ||| | ||| | | || ||||| ||| || ||| Sbjct 23336 GAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGCGGCGAGTTC 23277 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAG 95268 || ||| | |||||| |||| | |||||| | | || ||||| ||| | Sbjct 23276 CCGGTCGTGAACAAGTACCTTGTGATGGACCTCATCAAGCGAGGCCTGTGGAATGAAACC 23217 Query 95269 GTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAG 95328 | ||| | | | | |||||||||| ||| || || || ||||| Sbjct 23216 ATGCGCAACGAGATCATCACCTTCAACGGCTCCATCCTGACGATTGACGGTATTCCGGAC 23157 Query 95329 GACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 ||| | |||| ||||||| || ||||||||||||||||||||| Sbjct 23156 GACCTGAAGGAGCTCTACCGTACGGTGTGGGAGATCCCGCAGCGC 23112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494702588594680