Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1890 255 6e-63 seq1439 172 5e-38 seq1438 172 5e-38 seq1113 172 5e-38 seq910 172 5e-38 seq1185 86.0 6e-12 >seq1890 Length=30326 Score = 255 bits (282), Expect = 6e-63 Identities = 589/873 (67%), Gaps = 27/873 (3%) Strand=Plus/Plus Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGA 153651 || ||| || || || || || || || |||||||| || |||| | |||||| || | Sbjct 23835 CAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGG-TGTACTCGACAA 23893 Query 153652 TCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGAT 153711 |||| | ||| ||||| ||| || ||| ||| | || | ||| || || | | Sbjct 23894 TCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTGT 23953 Query 153712 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA- 153770 ||||||| || ||| | || ||| |||| |||| ||||||| |||| |||| ||| Sbjct 23954 TGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGG 24013 Query 153771 --AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATC 153828 |||| || |||||||| | | | |||| | ||||||||| |||||| | Sbjct 24014 CGAACCA---CACCTCCTGCGCCTGAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAAC 24070 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACA-CTGATGC 153887 |||| ||||| ||||| ||||| ||||||||||||||| ||| || ||||| || | | Sbjct 24071 GCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGCT-C 24129 Query 153888 GGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACC 153947 || |||||||| |||| | | || | || || || |||||| || || || | | Sbjct 24130 GGGTCCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATC 24189 Query 153948 CAGAGCGCGTACATGAGGTCGCGCGC---CTTGCAATCCTCCGCGCCCATGTTGCGTTTC 154004 || |||||||| | |||||||| || || | || ||| ||| |||| || ||| Sbjct 24190 CACAGCGCGTAGAACAGGTCGCGTGCACGCTGG---TCGTCCTTGCCGGTGTTACGCTTC 24246 Query 154005 AGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCT 154064 || || | | |||||||||||||||| || |||| || ||||| | ||||||| Sbjct 24247 AGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCT 24306 Query 154065 TTACGCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATG 154121 || ||||| ||| ||||| || |||| ||| | | ||||||||||| |||| |||| Sbjct 24307 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATG 24366 Query 154122 GGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACT 154181 ||| ||| || ||| ||||| || || ||| | ||||||| || ||| | Sbjct 24367 GGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATG 24426 Query 154182 TGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGC 154241 | ||||| | | |||||||||||| | ||| ||| | || || || ||| Sbjct 24427 TTGTGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGT 24486 Query 154242 GTCCTGTAGATGCCGTCGATGCTATCGT-CGCGGACGC--CGAGCAAGAAACACGAACAC 154298 || |||||| || || || || || | | ||||| |||| ||| || || | | Sbjct 24487 GTATCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAG---GAAGCAAGAGCTC 24543 Query 154299 ATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTT 154358 || ||||| | |||| || || |||||||| || | |||||||| || | Sbjct 24544 ATCTGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCC 24603 Query 154359 TGGCTCATCATGCGGTACGTTTCGATGGCG-TCTTCGATATCATCGCCGTGAATGCCGAG 154417 | ||||| |||||| || || ||||| | ||| | ||| |||||||| Sbjct 24604 TTCGACATCAGCTCGTACGTCTCACGCACGTTCTTC-AGGTCACCTAAGTGGATGCCGAG 24662 Query 154418 CGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 |||||||| | | || |||||||| || || Sbjct 24663 GGCGACGCGGAGAAACAACTGCTGCGGGCGCTC 24695 >seq1439 Length=11893 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 421 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 362 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 361 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 302 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 301 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 243 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 242 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 183 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 182 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 124 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 123 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 66 >seq1438 Length=1320 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 421 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 362 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 361 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 302 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 301 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 243 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 242 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 183 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 182 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 124 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 123 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 66 >seq1113 Length=1237 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 685 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 626 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 625 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 566 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 565 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 507 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 506 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 447 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 446 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 388 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 387 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 330 >seq910 Length=2952 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 2400 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 2341 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 2340 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 2281 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 2280 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 2222 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 2221 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 2162 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 2161 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 2103 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 2102 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 2045 >seq1185 Length=29681 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || |||| Sbjct 29487 GACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCG 29546 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 29547 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 29606 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | ||| || || ||||| || || Sbjct 29607 TTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTC 29666 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 29667 ACGAAGATCTGCATG 29681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496241724467760