Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1890 167 3e-36 seq2691 84.2 3e-11 seq2223 84.2 3e-11 >seq1890 Length=30326 Score = 167 bits (184), Expect = 3e-36 Identities = 1058/1683 (63%), Gaps = 43/1683 (3%) Strand=Plus/Plus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 |||||| | ||| || || |||| |||||| ||||| || | || ||| | ||| | | Sbjct 22950 CGCCTTGGTGCGCAGGTAGTACACACCCGTCTTGAGCCCCGACTCCCACGTGTAGAAGAG 23009 Query 109458 CATTGAAGAGAGTTTGGAAAGTG-TCGGACTCTCCATAAACAAGTTCATCGACTGAGACT 109516 ||| || | || ||||| || | | || |||| || ||||| |||| |||||| || | Sbjct 23010 CATCGACGTGA-TTTGGCCAGAGGTGGGGCTCTGCAAAAACAGATTCAGCGACTGGGATT 23068 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTT 109573 | |||||| | | ||||| || |||||||| || | | | || || || | Sbjct 23069 GGTCGATGTACTGGCCACGGTCGCGGGCCATGTCAATCAGCTTGCGCTGCGGG---ATCT 23125 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| || || ||| | | ||| | || || ||||| | | || | | || | Sbjct 23126 CCCACACCGTACGGTAGAGCTCCTTCAGGTCGTCCGGAATACCGTCAATCGTCAGGATGG 23185 Query 109634 AGCCACCAGCCTTCACCATGA-GATCC--TT---CATCTCTTTCGACCAGAGACCGACCT 109687 |||| || | ||| |||| || ||| || ||| || || || Sbjct 23186 AGCCG------TTGAAGGTGATGATCTCGTTGCGCATGGTTTCATTCCACAGGCCTCGCT 23239 Query 109688 TTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTC 109747 | |||| || ||||| | |||||| || || || || || || || | Sbjct 23240 TGATGAGGTCCATCACAAGGTACTTGTTCACGACCGGGAACTCGCCGCTCAGCACACGGC 23299 Query 109748 GGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAG 109807 ||| ||||||||| | ||| |||| ||||| |||||||||||||| || || || | | Sbjct 23300 GGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGAGG 23359 Query 109808 TGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCC 109867 |||| || |||||||| || || | || || ||| || | ||| | | ||| Sbjct 23360 TGGACGCAGTGGGCATCGGCGCAACCAGCAGCGAGTTCCGCATACCGACCTGCACCACCT 23419 Query 109868 GCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC--CCACAT 109925 ||| | |||||| || | || || || || | | || |||||| Sbjct 23420 TCTCCTTGAGGCTGTCCCAGTCCCAGCGGCCGCTG--TTCGGGCGGGGGTTCTTCCACAT 23477 Query 109926 ATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTC 109985 || ||| || | |||| || || ||||||||| | ||||| | ||||| Sbjct 23478 GTCGAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGGGCCCTC 23537 Query 109986 AACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG 110045 ||| |||| ||| || ||||| | || ||| || || ||||| || || | Sbjct 23538 CTCCTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAAGATCTC 23597 Query 110046 AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATC 110105 || |||| | | ||| | | | || || |||| | ||||| ||| |||| Sbjct 23598 CGCGTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAACGCATC 23657 Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGT 110165 ||| || ||||| || || | || | ||| || | ||| || ||| || || || Sbjct 23658 CGCCAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTGCTGCGGCGCGCCGT 23717 Query 110166 TTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 || || ||||| |||| ||||| || || ||||| || || || | |||||| Sbjct 23718 CTCAACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGATTTGCTTCGT 23777 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAG 110285 || | ||| | || || | | | |||||| || || | || || Sbjct 23778 GACGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAG 23837 Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 || || || || || |||||||| | ||||| ||| |||||| || | ||| || Sbjct 23838 GGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACAATCTC 23897 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 ||| |||| ||| || | ||| ||| || | ||||||||| || || || |||||| Sbjct 23898 CGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTGTTGCA 23957 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 |||||||| || || ||| | || || || || |||| |||| ||| ||||| Sbjct 23958 CGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAA 24017 Query 110466 CCATACATCGGCGGCGGGGACAGT-TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGT 110524 ||| || || || | | || ||| | || | || ||| ||||||| | Sbjct 24018 CCACACCTCCTGCGCCTGAATCGTCTGCAC-ACCGCGGCCCTCCGCCTCGTAACGCTCAT 24076 Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT---CGGGAC 110581 ||| ||| || |||| ||||| || ||||| | | | || |||| | Sbjct 24077 ACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACC--TGGACAGGTGCTCGGGTC 24134 Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 | || | ||| || || || || || | ||||||||| ||||| |||||||||| Sbjct 24135 C-ATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATCCACA 24193 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT-AGCTCC 110700 ||| |||| ||||| || ||| || || | || ||| | || | ||| | Sbjct 24194 GCGCGTAGAACAGGTCGCGTGCACGCTGGTCGTCCTTGCCGGTGTT-ACGCTTCAGCAGC 24252 Query 110701 AAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG- 110759 | ||| | | ||| || | |||||| || || ||||| || || | || || || || Sbjct 24253 AGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCGC 24312 Query 110760 --ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817 || || |||||| || ||||| || ||| |||||||| | ||||| || | Sbjct 24313 TTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTACC 24372 Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA---CGAATGTCG 110874 | |||| || ||||| || || || | | | ||| ||||||| | Sbjct 24373 AAACCATTTGACGTGCCATTCGTGCCGGCGAT---GTAGCTGCCGGCGGAGCGAATGTTG 24429 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934 || | ||||| |||||| || || || ||| || || |||||||| | |||||| Sbjct 24430 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 24489 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 | || ||||||||||| ||| |||| |||| || |||||||| |||||| Sbjct 24490 TCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCTCATCTGC 24549 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGAC 111054 || ||||| || || |||||||| || || || || || |||| | ||| | ||| Sbjct 24550 GGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTCGAC 24609 Query 111055 ATC 111057 ||| Sbjct 24610 ATC 24612 >seq2691 Length=10735 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 7579 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 7638 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 7639 CTGTTGGGAGCA-CTTTT 7655 >seq2223 Length=57454 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 33598 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 33539 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 33538 CTGTTGGGAGCA-CTTTT 33522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 33842 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 33901 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 33902 CTGTTGGGAGCA-CTTTT 33918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588951461787400