Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1890 138 1e-27 seq759 93.3 5e-14 seq2223 82.4 9e-11 >seq1890 Length=30326 Score = 138 bits (152), Expect = 1e-27 Identities = 552/856 (64%), Gaps = 21/856 (2%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || |||||||| || || | ||||| || |||||||| || |||||||| | | Sbjct 23833 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACA 23892 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 23893 ATCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTG 23952 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||||||||||||||| || ||| | ||| || ||||| |||| |||| ||| || Sbjct 23953 TTGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATG 24012 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGT-TG----GCCCGTCCCTCCGCCTCG 106690 || |||||| | | ||| ||| ||| ||| || | || |||||||||||| Sbjct 24013 GCGAACCACACCTCCTGCGCCTG----AAT--CGTCTGCACACCGCGGCCCTCCGCCTCG 24066 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 106750 || || || || |||||||| || |||| ||||||||| || Sbjct 24067 TAACGCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTG 24126 Query 106751 -TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || | | || | ||| | || || || || ||||||||||| ||||| || Sbjct 24127 CTCGGGTC-CATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGG 24185 Query 106810 AATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 ||||||||| | | || || || | | || || || || | || ||| | Sbjct 24186 AATCCACAGCGCGTAGAACAGGTCGCGTGCA-CGCTGGTCGTCCTTGCCGGTGTTACGCT 24244 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | || ||| | | ||| || |||||||| ||||||||||| || || | | | Sbjct 24245 TCAGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCAC 24304 Query 106929 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | || || || ||| | || | || ||||| || ||| ||| || || || |||| Sbjct 24305 CTTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCA 24364 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 107044 | || | | ||||| ||| ||||| || || || || | || | Sbjct 24365 TGGGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCGA 24423 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | | || | |||| ||||| || || || ||| ||| ||||||||| | Sbjct 24424 ATGTTGTGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTC 24483 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | |||||||| | || ||| ||||| || | ||||||||| | | Sbjct 24484 AGTGTATCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCTC 24543 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 |||||||| | || || ||||| ||||||||||| || || ||||| |||| | ||| Sbjct 24544 ATCTGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCC 24603 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | |||||| ||||| ||||| || | | ||| | ||||||||||| | Sbjct 24604 TTCGACATCAGCTCGTACGTCTCACGCACGTTCTTCAGGTCACCTAAGTGGATGCCGAGG 24663 Query 107285 GCCACACGCATAAACA 107300 || || || | ||||| Sbjct 24664 GCGACGCGGAGAAACA 24679 >seq759 Length=10272 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 22 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 81 Query 136224 CAGGTAGGAGC 136234 | ||||||||| Sbjct 82 CTGGTAGGAGC 92 >seq2223 Length=57454 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 34020 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 33961 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 33960 CAGGTAGGAG 33951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589956219924920