Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq1164 136 7e-27 >seq1164 Length=56265 Score = 136 bits (150), Expect = 7e-27 Identities = 271/387 (70%), Gaps = 21/387 (5%) Strand=Plus/Plus Query 168645 ACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGAA---CGCCGGCACGAAC 168701 |||||||||||||| |||||||| ||| ||| ||| |||| ||||| | | || Sbjct 7873 ACGTAGTTGTGGTGGCAGTTCACAGCTGTTTTGGTGGTGGTGAAGGGCGCCGCAATGTAC 7932 Query 168702 TCCCGGATCGCCTTGAGCACGCGGA-CCATCATCATGTCGCGGTTCAGGCGCGCGAAGTC 168760 ||||| |||| || | ||| || | ||| ||||| | |||||| | || || Sbjct 7933 TCCCGCATCGTCTCCACCAC-CGCATCCAGCATCACCTGCCGGTTCCACCAGGCAAACCG 7991 Query 168761 TTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCGCCCACTTCG-AGCC 168819 |||||||| ||||||| ||||||||||| ||| | |||| || || || Sbjct 7992 CTGCGCCCACTCCACGGCGAAGATGTAGTCGTTGAACTG-TGCTGTACCCTCGCGCAGAT 8050 Query 168820 ACGCGAGGTTCTCGTCCTGCGGGCG-CACA-TGGCGCTTTGCC-AGGGCGTTCTTCGCCT 168876 |||| || | ||||||| || |||| | || | | || ||| | | | ||||| ||| Sbjct 8051 ACGCCAGATCCTCGTCCGGCAGGCGACTCAGTTGTGC---GCCGACGTCTTTCTTGGCCA 8107 Query 168877 TCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGATCCCGAGTGCAGCATCA 168936 |||||||||| | |||| || |||||| || |||||||| || || || ||||||| Sbjct 8108 GCTCGATGAAGATGGTGCCAATACGGTTGCCCACCCCGCGCGAGCCGGAATGGAGCATCA 8167 Query 168937 CCCACACGTTCGGGTCC-GTCGTCCCCTGATCGGTCTGGATGCAGATTTCGATGAAGTGG 168995 ||||||| | ||| || || || ||||| || || ||||| |||||||||||| Sbjct 8168 CCCACACATGCGGCACCGGTTGT----TGATC-ATCCAGA--CAGATCTCGATGAAGTGG 8220 Query 168996 TTGCCGCCACCCAGCGACCCGAGTTGG 169022 ||||| ||||| | ||||| ||| Sbjct 8221 TTGCCAGTGCCCAGGGTGCCGAGGTGG 8247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895729080132360