Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq1164 104 3e-17 >seq1164 Length=56265 Score = 104 bits (114), Expect = 3e-17 Identities = 261/388 (67%), Gaps = 18/388 (5%) Strand=Plus/Plus Query 139748 CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGCGGCAG 139807 ||||| ||||||||||||||||||||||| ||| ||| || ||||||||| | Sbjct 7866 CTTCTCCACGTAGTTGTGGTGGCAGTTCACAGCTGTTTTGGTGGTGGTGAAGGGCGCCGC 7925 Query 139808 GCCCGAGGCGCGCATGGCGTCCAGGACCCGGATC-ATCATCATCTCGCGGTTGATCCGCG 139866 | | ||||| | |||| ||| | ||| | ||||| || ||||| || | Sbjct 7926 AATGTACTCCCGCATCGTCTCCACCACC-GCATCCAGCATCACCTGCCGGTTCCACCAGG 7984 Query 139867 CGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGCCTTCCG 139926 | || ||| |||| | ||||| | |||||||| ||| | | || || Sbjct 7985 CAAACCGCTGCGCCCACTCCACGGCGAAGATGTAGTCGTTGAACTGTGCTGTACCCTCGC 8044 Query 139927 ACAGCCACGCGAGGTCCTTGTCGAGC-GGCTTCTGACCGTCCCGACGCAGCATCATCTC- 139984 ||| |||| || |||| ||| || ||| || | || | ||| | | ||| Sbjct 8045 GCAGATACGCCAGATCCTCGTCCGGCAGGCGACTCA--GTTGTG-CGCCGA--CGTCTTT 8099 Query 139985 CTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTG 140044 ||||||| |||||||||||| ||| || |||||| || ||||||||||| || || Sbjct 8100 CTTGGCCAGCTCGATGAAGATGGTGCCAATACGGTTGCCCACCCCGCGCGAGCCGGAATG 8159 Query 140045 GAGCATCACCCAGAC--GC-------GCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTG 140095 |||||||||||| || || | || | || || || |||| |||||||||||| Sbjct 8160 GAGCATCACCCACACATGCGGCACCGGTTGTTGATCATCCAGACAGATCTCGATGAAGTG 8219 Query 140096 GTTGCCGCCGCCCAGCGTGCCCAGTTGG 140123 |||||| |||||| ||||| || ||| Sbjct 8220 GTTGCCAGTGCCCAGGGTGCCGAGGTGG 8247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715746178982400