Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1890 131 5e-25 >seq1890 Length=30326 Score = 131 bits (144), Expect = 5e-25 Identities = 379/568 (67%), Gaps = 23/568 (4%) Strand=Plus/Plus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACA 155647 || || || || || || ||||| ||||||| || || | |||| || |||||||| Sbjct 23842 ATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGG-TGTACTCGACAATCTCCGT 23900 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 ||||||||| || | |||||||||||| | ||||||||||| || |||||||| || || Sbjct 23901 GCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTGTTGCACGC 23960 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 ||||||||| || ||| | || |||||||| ||||| | || || || | ||| Sbjct 23961 ATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAACCA 24020 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAG 155827 | || | || | ||| || | ||| |||| ||| || | |||||| Sbjct 24021 CACCTCCTGCGCCTGAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAACGCTCATACAG 24080 Query 155828 -CGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA-CTTATCGGGGCAAAAC 155885 || || | | ||||| ||||| || || || || || || || | ||||| | | | Sbjct 24081 ACGCTC-GAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGCTCGGGTC-CATC 24138 Query 155886 AGCGACCAAATTTTATTACCGA--TTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 |||| || | || |||| | ||||||| ||| || | || ||| | | Sbjct 24139 AGCGTCC--ACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATCCACAGCG 24196 Query 155944 CATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC---GTGATTCTTCCGTAGCTCT 155999 | ||||| ||||| | ||| | || || || | ||| || | |||| | ||| Sbjct 24197 CGTAGAACAGGTCGCGTGCACGCTG-GTCGTCCTTGCCGGTGTTACGCTTCAGCAGC--- 24252 Query 156000 AAGAATTCCTCA-ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCT 156058 |||| || | || || | || ||||| ||||||| ||||| ||| || | Sbjct 24253 -AGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCG 24311 Query 156059 CTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAAT 156115 ||| ||||||||| || || || || || || || |||||||||| ||||| || | Sbjct 24312 CTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTAC 24371 Query 156116 AATACCATTGGAAGTGCCATTGGTTCCG 156143 | |||||| || |||||||| || ||| Sbjct 24372 CAAACCATTTGACGTGCCATTCGTGCCG 24399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471754747409221