Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1890 87.8 2e-12 >seq1890 Length=30326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 221/332 (67%), Gaps = 7/332 (2%) Strand=Plus/Plus Query 151709 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCT 151765 |||||| |||||||| |||| ||||| || ||| ||||| ||||| |||||| Sbjct 24265 ATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCGCTTACCGCCACCC 24324 Query 151766 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 151825 || ||||||| || | | || || || || |||||||| |||| || || | | Sbjct 24325 TGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTACCAAACCATTTGAC 24384 Query 151826 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCA 151885 ||||| ||||| || | |||| | | ||| | | ||| ||| | ||| ||| Sbjct 24385 GTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATGTTGTGCACATGCAAACCA 24444 Query 151886 ATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGA 151945 || |||||| | || ||| | ||| || || || | ||| | ||||| || | Sbjct 24445 ATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTATCGTAGATACCATCA 24504 Query 151946 ATGCTATCG-CTTTCCATGGTCAAT-AGAAAACATGAACTCATCTGCGGTGTCAGAGTGC 152003 || || || | ||| | | ||| || || || || ||||||||||| || | |||| Sbjct 24505 ATACTGTCTTCCTTCGACG--CAACGAGGAAGCAAGAGCTCATCTGCGGCTTCGGCGTGC 24562 Query 152004 CGGCAGCGAACATGGTTGGGCTTGCGTGCGTG 152035 | || ||| | ||| ||| | ||||||||| Sbjct 24563 CAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTG 24594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488523646035600