Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1890 232 6e-56 seq1439 107 2e-18 seq1438 107 2e-18 seq1113 107 2e-18 seq910 107 2e-18 >seq1890 Length=30326 Score = 232 bits (256), Expect = 6e-56 Identities = 582/870 (67%), Gaps = 21/870 (2%) Strand=Plus/Plus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGA 147514 || |||||| || || || ||||| || |||||||| || |||| | |||||| || | Sbjct 23835 CAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGG-TGTACTCGACAA 23893 Query 147515 TTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGAT 147574 | || | ||||||||| ||| || ||| || | || | ||| || || | | Sbjct 23894 TCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTGT 23953 Query 147575 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA- 147633 ||||||| || ||| | || ||| |||| |||| ||||||| |||| || | ||| Sbjct 23954 TGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGG 24013 Query 147634 --AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACC 147691 |||| || |||||||| | | | |||| | ||||||||| ||||| | Sbjct 24014 CGAACCA---CACCTCCTGCGCCTGAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAAC 24070 Query 147692 GCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACA-CTGATGC 147750 |||| |||| ||||| ||||| ||||||||||| ||| || || ||||| || | | Sbjct 24071 GCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGCT-C 24129 Query 147751 GGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACC 147810 || |||||||| |||| | | |||| || || || ||| || || || || | | Sbjct 24130 GGGTCCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATC 24189 Query 147811 CACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA 147870 ||||||||||| | || ||||| || || || ||| |||| || |||| Sbjct 24190 CACAGCGCGTAGAACAGGTCGCGTGCACGCTGGTCGTCCTTGCCGGTGTTACGCTTCAGC 24249 Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | | |||||||||||||||| || |||| || ||||| | |||||||| Sbjct 24250 AGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTG 24309 Query 147931 CGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| |||||||| || | ||| | ||||||| || || |||| ||||||| Sbjct 24310 CGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGT 24369 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 ||| || | | ||||| || ||| ||| | ||||||| || || | | | Sbjct 24370 ACCAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATGTTG 24429 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 ||||| | | |||||||||||| | ||| ||| | || || || || ||| Sbjct 24430 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 24489 Query 148108 GTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACATTTG 148166 |||||| || || || ||||| | || |||| ||| | || || || | ||| || Sbjct 24490 TCGTAGATACCATCAATACTGTCTTCCTTCGACG-CAACGAGGAAGCAAGAGCTCATCTG 24548 Query 148167 CGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGA 148224 ||| || |||| || || ||| ||||| || | |||||||| || || || || Sbjct 24549 CGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTCGA 24608 Query 148225 CTCATCATGCGATACGTCTCAATAGCG-TCTTCGATGTCGTCGCCGTGAATGCCCAGCGC 148283 ||||| ||||||||| || ||||| | ||| | ||| ||||| || || Sbjct 24609 --CATCAGCTCGTACGTCTCACGCACGTTCTTC-AGGTCACCTAAGTGGATGCCGAGGGC 24665 Query 148284 GACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||| | | || ||||| || || || Sbjct 24666 GACGCGGAGAAACAACTGCTGCGGGCGCTC 24695 >seq1439 Length=11893 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 421 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 362 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 361 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 303 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 302 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 245 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 244 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 186 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 185 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 126 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 125 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 81 >seq1438 Length=1320 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 421 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 362 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 361 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 303 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 302 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 245 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 244 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 186 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 185 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 126 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 125 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 81 >seq1113 Length=1237 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 685 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 626 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 625 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 567 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 566 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 509 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 508 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 450 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 449 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 390 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 389 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 345 >seq910 Length=2952 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 2400 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 2341 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 2340 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 2282 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 2281 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 2224 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 2223 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 2165 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 2164 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 2105 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 2104 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 2060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476591343185880