Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1185 105 7e-18 seq1890 89.7 5e-13 >seq1185 Length=29681 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| |||||||| ||||| || ||||||||||| | | ||| | Sbjct 29463 AGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 29522 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 29523 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 29582 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 29583 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCG 29642 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 29643 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 29680 >seq1890 Length=30326 Score = 89.7 bits (98), Expect = 5e-13 Identities = 234/354 (66%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 |||||||| || || || || ||| | || ||| || || ||| || ||| Sbjct 24515 GAAGACAGTATTGATGGTATCTACGATACACTGAAGGAGTGTGCCGTCATCAGCAAGGCT 24456 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || ||| || | || || || | ||| || ||| ||| ||||| | Sbjct 24455 GCCGGCGGCATTGGTTTGCATGTGCACAACATTCGCTCCGCCGGCAGCTACATCGCCGGC 24396 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || || || | | | ||||| | |||||| |||| || ||||| ||| | | || Sbjct 24395 ACGAATGGCACGTCAAATGGTTTGGTACCCATGCTGCGTGTCTTCAACAACACCGCCCGC 24336 Query 7915 CATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||||| || ||||||||||| ||| |||| | ||| | ||||||||| Sbjct 24335 TACGTGGACCAGGGTGGCGGTAAGCGCAAAGGTGCCTTTGCCGTGTATCTTGAGCCGTGG 24276 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||| | || | || ||| || |||| || || || |||| Sbjct 24275 CACGCCGACATCTTCGGGTTTCTGCTGCTGAAGCGTAACACCGGCAAGGACGACCAGC-G 24217 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || ||||| || |||| || ||||| | ||||| || || |||| ||| || Sbjct 24216 TGCACGCGACCTGTTCTACGCGCTGTGGATTCCCGACCTCTTCATGAAGCGTGT 24163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505377343839160