Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1890 123 3e-23 seq759 93.3 5e-14 seq2223 82.4 1e-10 >seq1890 Length=30326 Score = 123 bits (136), Expect = 3e-23 Identities = 519/804 (65%), Gaps = 23/804 (3%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || |||||||| || || | ||||| || |||||||| || |||||||| | | Sbjct 23833 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACA 23892 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| || || || | ||||| ||||| ||| || Sbjct 23893 ATCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTG 23952 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||||||||||||||| || ||| | ||| || ||||| |||| || | ||| || Sbjct 23953 TTGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATG 24012 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGT-TG----GCCCGTCCCTCCGCCTCG 111463 || ||| || | | ||| ||| ||| ||| || | || |||||||||||| Sbjct 24013 GCGAACCACACCTCCTGCGCCTG----AAT--CGTCTGCACACCGCGGCCCTCCGCCTCG 24066 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 || || || || |||||||| || |||| ||||||||| || Sbjct 24067 TAACGCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTG 24126 Query 111524 -TCTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 || || | | || | ||| || || || | || || ||||||||||| ||||| | Sbjct 24127 CTCGGGTC-CATCAGCGTCCACTTCCCCTCCGACTTC-ACACGCTTCATGAAGAGGTCGG 24184 Query 111582 GAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGT 111640 |||||||||| | | || || || | | || || || || | || ||| | Sbjct 24185 GAATCCACAGCGCGTAGAACAGGTCGCGTGCA-CGCTGGTCGTCCTTGCCGGTGTTACGC 24243 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 111700 | | || ||| | | ||| || |||||||| ||||||||||| || || | | Sbjct 24244 TTCAGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCA 24303 Query 111701 CCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 || || || || ||| | || | || ||||| || ||| ||| || || || ||| Sbjct 24304 CCTTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGC 24363 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCT 111816 || || | | ||||| ||| ||||| || || || || | || | Sbjct 24364 ATGGGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCG 24422 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | | || | |||| ||||| || || || ||| ||| ||||||||| | Sbjct 24423 AATGTTGTGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTT 24482 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 || || | |||||||| | || ||| ||||| || | ||||||||| | Sbjct 24483 CAGTGTATCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCT 24542 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 ||||||||| | || || ||||| ||||||||||| || || ||||| |||| | ||| Sbjct 24543 CATCTGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACC 24602 Query 111997 TTGGGACATCTTGTCGTATGTCTC 112020 | |||||| ||||| ||||| Sbjct 24603 CTTCGACATCAGCTCGTACGTCTC 24626 >seq759 Length=10272 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 22 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 81 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 82 CTGGTAGGAGC 92 >seq2223 Length=57454 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 34020 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 33961 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 33960 CAGGTAGGAG 33951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628005834616800