Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1890 150 2e-31 seq1439 116 5e-21 seq1438 116 5e-21 seq1113 116 5e-21 seq910 116 5e-21 seq2758 82.4 9e-11 >seq1890 Length=30326 Score = 150 bits (166), Expect = 2e-31 Identities = 1067/1700 (63%), Gaps = 57/1700 (3%) Strand=Plus/Plus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||||| | || |||||||||| ||||||||||||||| || ||| | || | || Sbjct 22951 GCCTTGGTGCGCAGGTAGTACACACCCGTCTTGAGCCCCGACTCCCACGTGTAGAAGAGC 23010 Query 117888 ATTGAGGACAACTTGGAGAG-GGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 117946 || || | | |||| || ||| || || | || || || |||| |||||||| Sbjct 23011 ATCGACGTGAT-TTGGCCAGAGGTGGGGCTCTGCAAAAACAGATTCAGCGACTGGGATTG 23069 Query 117947 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCA 118006 |||||| | | || || || ||||| ||||||| | | | ||| ||||| Sbjct 23070 GTCGATGTACTGGCCACGGTCGCGGGCCATGTCAATCAGCTTGCGCTGCGGGATCTCCCA 23129 Query 118007 CACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCC 118066 ||| || | |||||| | ||| | || || || ||| | | || | ||||||| || Sbjct 23130 CACCGTACGGTAGAGCTCCTTCAGGTCGTCCGGAATACCGTCAATCGTCAGGATGGAGCC 23189 Query 118067 ACCCGCCTTGACCATGA-GATCC---TTCATATCCTTTGA--CCAGAGACCAATCTTTTT 118120 |||| ||| |||| | | || ||| | ||| || || ||| | Sbjct 23190 G------TTGAAGGTGATGATCTCGTTGCGCATGGTTTCATTCCACAGGCCTCGCTTGAT 23243 Query 118121 GAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 118180 ||| ||| ||| || | ||| || || || ||||| || || || | | Sbjct 23244 GAGGTCCATCACAAGGTACTTGTTCACGACCGGGAACTCGCCGCTCAGCACACGGCGGAC 23303 Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||| || | ||| | ||||| |||||||||||||| || | || || | ||||| Sbjct 23304 GTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGAGGTGGA 23363 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC--CTTTTCCCTAATGCGT 118298 || |||||||| || || | || || ||| || | ||| | | || | | Sbjct 23364 CGCAGTGGGCATCGGCGCAACCAGCAGCGAGTTCCGCATACCGACCTGCACCACCTTC-- 23421 Query 118299 TCCTTGAGAGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTGCCACATATC 118351 |||||||| ||||||||| || | ||| | || | || |||||| || Sbjct 23422 TCCTTGAGGCTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTC 23480 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 || || || || || ||| ||| || |||| || || || || |||||||| | Sbjct 23481 GAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGGGCCCTCCTC 23540 Query 118412 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGC 118471 || |||| || |||||| | || || || || || || || || || Sbjct 23541 CTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAAGATCTCCGC 23600 Query 118472 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGC 118531 |||| || |||||| || |||||| || || || ||| || ||||||| Sbjct 23601 GTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAACGCATCCGC 23660 Query 118532 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG--GTC 118589 || || || || || | ||| | || || | | |||||| || | | ||| ||| Sbjct 23661 CAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTG--CTGCGGCGCGCCGTC 23718 Query 118590 TCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 118649 || || || || | || | || || || | ||| || || |||| ||| ||| Sbjct 23719 TCAACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGATTTGCTTCGTG 23778 Query 118650 ATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 118709 | | ||| | || || | ||| |||| || || || | || ||| Sbjct 23779 ACGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAGG 23838 Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || || || || ||||| | ||||| || |||||||| | ||| ||| Sbjct 23839 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACAATCTCC 23898 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||||| ||| || | ||| |||||||| | |||||| || |||||||| |||| ||| Sbjct 23899 GTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTTACTGTTGCAC 23958 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 |||||||||||||| ||| | ||| || ||||| | || |||| ||| || || | Sbjct 23959 GCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAAC 24018 Query 118890 CAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAG 118949 || || || || | | || | || ||||| ||||||| || Sbjct 24019 CACACCTCCTGCGCCTGAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAACGCTCATAC 24078 Query 118950 AGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGA---GCCCTGGTGCCTTATCTGGGC 119004 || || ||||| || || | | | |||||| | | ||||| || ||| Sbjct 24079 AGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGC----TC-GGGT 24133 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 | || | ||| | || || || || ||||||||||||||||| || ||||| | Sbjct 24134 CCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATCCACA 24193 Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTC 119122 |||| |||| || || || || ||| || || | || || | || | Sbjct 24194 GCGCGTAGAACAGGTCGCG--TGCACGCTGGTCGTCCTTGCCGGTGTTACGCTTCAGCAG 24251 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 || ||| | | ||| || ||||||||||| || || ||||| || | | || || || Sbjct 24252 CAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCG 24311 Query 119183 ---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 || ||| |||||| || || | || ||| ||| || ||||| ||||| || | Sbjct 24312 CTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTAC 24371 Query 119240 GATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCG 119297 | ||||| || |||||| || || ||| || | | || | | | | Sbjct 24372 CAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGAATGTTG 24429 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || | |||| |||||| || || || ||| ||| || |||||| | || | Sbjct 24430 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 24489 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATT 119414 ||||||| ||||| || ||| |||| || | |||||||| |||| ||| Sbjct 24490 TCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCT---CATC 24546 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG 119474 || ||| | || || |||||||||||||| || || || ||||| |||| | ||| | Sbjct 24547 TGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTC 24606 Query 119475 GACATCTTGTCGTAGGTCTC 119494 |||||| ||||| ||||| Sbjct 24607 GACATCAGCTCGTACGTCTC 24626 >seq1439 Length=11893 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 177 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 236 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 237 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 296 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 297 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 354 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 355 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 413 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 414 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 473 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 474 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 530 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 531 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 586 >seq1438 Length=1320 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 177 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 236 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 237 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 296 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 297 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 354 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 355 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 413 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 414 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 473 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 474 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 530 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 531 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 586 >seq1113 Length=1237 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 441 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 500 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 501 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 560 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 561 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 618 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 619 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 677 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 678 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 737 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 738 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 794 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 795 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 850 >seq910 Length=2952 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 2156 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 2215 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 2216 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 2275 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 2276 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 2333 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 2334 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 2392 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 2393 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 2452 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 2453 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 2509 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 2510 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 2565 >seq2758 Length=30615 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 |||||||||||||| |||||| || || || ||||| |||||||||||||| ||||| || Sbjct 28219 GATCTTACGATCAATGCGACCCGGACGCAGCAGGGCCTCGTCAAGGATATCCATGCGATT 28160 Query 14116 CGTCGCCGCGATGAC 14130 |||||| ||| || Sbjct 28159 GGTCGCCATGATCAC 28145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618409434443480