Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1439 105 8e-18 seq1438 105 8e-18 seq1113 105 8e-18 seq910 105 8e-18 >seq1439 Length=11893 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 631 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 572 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 571 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 515 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 514 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 455 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 454 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 395 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 394 CTGATCTCGCGCGACGAGGGCCTGCAC 368 >seq1438 Length=1320 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 631 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 572 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 571 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 515 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 514 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 455 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 454 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 395 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 394 CTGATCTCGCGCGACGAGGGCCTGCAC 368 >seq1113 Length=1237 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 895 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 836 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 835 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 779 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 778 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 719 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 718 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 659 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 658 CTGATCTCGCGCGACGAGGGCCTGCAC 632 >seq910 Length=2952 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 2610 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 2551 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 2550 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 2494 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 2493 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 2434 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 2433 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 2374 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 2373 CTGATCTCGCGCGACGAGGGCCTGCAC 2347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583236499896920