Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1890 253 2e-62 >seq1890 Length=30326 Score = 253 bits (280), Expect = 2e-62 Identities = 529/769 (69%), Gaps = 28/769 (4%) Strand=Plus/Minus Query 53198 CGCGTCGCCTTGGGTATCCAC---GGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||||||| | || |||||| |||||| | | |||| |||||||||||||| Sbjct 24671 CGCGTCGCCCTCGGCATCCACTTAGGTGACCTGAAGAA-CGTG--CGTGAGACGTACGAG 24615 Query 53255 TTAATGAGCCAAAAGTA-CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | ||| | || || ||| |||||||| || || ||||| ||||||||||| ||| Sbjct 24614 CTGATGT-CGAAGGGTTTCTTCACGCACGCTACCCCGACCCTCTTCAACGCTGGCACGCC 24556 Query 53314 TCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | || |||||| |||| ||||||| || ||| |||||| ||| || || || Sbjct 24555 GAAGCCGCAGATG---AGCTCTTGCTTCCTCGTTGCGTCGAAGGAAGACAGTATTGATGG 24499 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| || || |||||||||||| |||| |||| | || || || ||| | Sbjct 24498 TATCTACGATACACTGAAGGAGTGTGCCGTCATCAGCAAGGCTGCCGGCGGCATTGGTTT 24439 Query 53431 CCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || ||| | ||| | || | ||||| ||| || ||||| ||| | Sbjct 24438 GCATGTGCAC-AACATTCGCTCCGCCGGCAGCTACATCGCCGGCACGAATGGCACGTCAA 24380 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 |||| | || || ||||| || |||||||||||||| ||||| ||||| ||||||||| Sbjct 24379 ATGGTTTGGTACCCATGCTGCGTGTCTTCAACAACACCGCCCGCTACGTGGACCAGGGTG 24320 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | || |||||||| || | || ||| | || || |||||||||||||||||||| | | Sbjct 24319 GCGGTAAGCGCAAAGGTGCCTTTGCCGTGTATCTTGAGCCGTGGCACGCCGACATCTTCG 24260 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT- 53667 |||||| |||| | || || | || || ||| ||| || |||||||| Sbjct 24259 GGTTTCTGCTGCTGAAGCGTAACACCGGCAAGGACGACCAGCG-TGCACGCGACCTGTTC 24201 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| || ||||||||||| |||||||||||| | ||| || ||| | | ||||| Sbjct 24200 TAC-GCGCTGTGGATTCCCGACCTCTTCATGAAGCGTGTGAAGTCGGAGGGGAAGTGGAC 24142 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CTACGGTGAGGAGTTTAACG 53786 |||||| ||||| | || || || || ||| | | |||||| |||||||| || Sbjct 24141 GCTGATGGACCCGAGCACCTGTCCAGGTCT-CAGCGACTGCTACGGCGAGGAGTT---CG 24086 Query 53787 AG---ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 || ||||| | |||| | |||||||| | ||| | | |||||| | Sbjct 24085 AGCGTCTGTATGAGCGTTACGAGGCGGAGGGCCGCGGTGTGCAGACGATTCAGGCGCAGG 24026 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 |||| ||| || |||||| || ||| | ||||| || ||||| ||| |||| Sbjct 24025 AGGTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACAGGCGTGCCGTTCATCCTTTACA 23966 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||||| || |||| ||| |||||||||||| ||||| |||||| Sbjct 23965 AGGATGCGTGCAACAGTAAGTCAAACCAGAAGAACCTCGGCACCATCAA 23917 Score = 122 bits (134), Expect = 1e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 || |||||| | ||||| |||||||||||||| || ||| | |||||||||||| Sbjct 23153 CTGAAGGAGCTCTACCGTACGGTGTGGGAGATCCCGCAGCGCAAGCTGATTGACATGGCC 23094 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA-ATCC 55845 || ||||| |||||||||||| |||||||| ||||| | || || ||| || Sbjct 23093 CGCGACCGTGGCCAGTACATCGACCAATCCCAGTCGCTGAATCTGTTTTTGCAGAGCCCC 23034 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||||||| | | ||||||| ||| ||| |||| || ||| ||||||||||| Sbjct 23033 ACCTCTGGCCAA-ATCACGTCGATGCTCTTCTACACGTGGGAGTCGGGGCTCAAGACGGG 22975 Query 55906 TATGTACTATCTGCGGACC 55924 | ||||||| ||||| ||| Sbjct 22974 TGTGTACTACCTGCGCACC 22956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193201613400