Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1890 170 2e-37 seq1185 154 2e-32 seq1439 96.9 4e-15 seq1438 96.9 4e-15 seq1113 96.9 4e-15 seq910 96.9 4e-15 >seq1890 Length=30326 Score = 170 bits (188), Expect = 2e-37 Identities = 610/940 (65%), Gaps = 23/940 (2%) Strand=Plus/Plus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| || | ||||||| ||| || ||| ||| || ||||| || Sbjct 23472 CCACATGTCGAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGG 23531 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||||| ||| |||| ||| |||| || | || || || ||| ||| || Sbjct 23532 GCCCTCCTCCTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAA 23591 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 || || |||||| |||||| | | | |||| || | | || ||||| Sbjct 23592 GATCTCCGCGTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAA 23651 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC---TTGTTCGATCG 80777 | | || ||||| ||||| ||||| | | ||| || |||| |||| ||| | || Sbjct 23652 CGCATCCGCCAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTGCTGCGGCG 23711 Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 | | | ||| || ||||| ||||| || || ||||| |||||||||||||| | Sbjct 23712 CGCCGTCTC---AACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGAT 23768 Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG---TTCCCCT---TCACAAA 80891 | || || | || ||| ||| | | | ||| ||| |||| || Sbjct 23769 TTGCTTCGTGACGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAA 23828 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 ||| ||| | ||| || || |||||||| ||| ||| || | || |||| Sbjct 23829 GCGCGGCAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTC 23888 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||| || |||||||||| || || |||| || || || ||||| |||||||||||||| Sbjct 23889 GACAATCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTTGACTT 23948 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 |||||| || |||||||| ||| |||| || ||||||| ||| |||| ||| Sbjct 23949 ACTGTTGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAG 24008 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGA-ATTTGCCTTCGGCCACAT 81130 ||||||| ||| | ||| |||||| | | | ||| | ||| || ||| | | Sbjct 24009 GATGGCGAACCACACCTCCTGCGCCTGAATCGTC-TGCACACCGCGGCCCTCCGCCTCGT 24067 Query 81131 ACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTC 81188 | | || || | ||||||| | |||| | || || |||| |||| || Sbjct 24068 AACGCTCATACAGACGC-TCGAACTCCTCGCCGTAGCAG-TCGCTGAGACCTGGACAGGT 24125 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 | | ||| |||||| ||| | || || ||| ||||||||| ||| || Sbjct 24126 GCTCGGGTCCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGG 24185 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 ||||| || ||| |||||||||||| ||| ||| || || | || ||| | Sbjct 24186 AATCCACAGCGCGTAGAACAGGTCGCGTGCA-CGCTGGTCGTCCTTGCCGGTGTTACGCT 24244 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 || | ||||| | | |||||| || ||||| ||||| ||||||||||| | | | Sbjct 24245 TCAGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCAC 24304 Query 81368 CCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | ||||| || ||||||||||| ||||| ||||| || ||| || ||||||| || Sbjct 24305 CTTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCA 24364 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT 81464 | || | | ||||| |||| || ||||| || |||| Sbjct 24365 TGGGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGAT 24404 >seq1185 Length=29681 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 29680 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 29621 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 29620 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 29561 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || || ||||| || Sbjct 29560 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 29501 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| || || || || |||| || ||||||||| Sbjct 29500 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGA 29453 >seq1439 Length=11893 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 493 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 434 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 433 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 374 Query 64849 CTCCAC 64854 || ||| Sbjct 373 CTGCAC 368 >seq1438 Length=1320 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 493 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 434 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 433 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 374 Query 64849 CTCCAC 64854 || ||| Sbjct 373 CTGCAC 368 >seq1113 Length=1237 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 757 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 698 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 697 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 638 Query 64849 CTCCAC 64854 || ||| Sbjct 637 CTGCAC 632 >seq910 Length=2952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 2472 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 2413 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 2412 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 2353 Query 64849 CTCCAC 64854 || ||| Sbjct 2352 CTGCAC 2347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570286639442960