Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216585.1_202017-07-11] 3,333 sequences; 31,522,544 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3268 89.7 4e-13 seq2637 89.7 4e-13 >seq3268 Length=64983 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 53531 ATGGGCGACAAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAG--CGGTCCTG 53587 || || |||||||| |||| | ||||| ||| ||||| || ||| | || | | Sbjct 59976 ATTGGTGACAAGTTCTGCAGTCGGCACGG-GCAGAAGGGCACGAACGGTATTCAGTTCCG 60034 Query 53588 ACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCC 53647 || |||| |||||||||||| || ||||| | ||||| |||||||||||||| ||| Sbjct 60035 AC--AGGAAGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAATCCC 60092 Query 53648 CACGCCTTTCCCTCCAGGATGACGGT 53673 |||||| ||||||| | |||||||| Sbjct 60093 CACGCCATTCCCTCACGCATGACGGT 60118 >seq2637 Length=10591 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||||| ||||||||| ||||||||| || || || |||||||| || | ||| | Sbjct 8754 TCAGCGCCTCCACGTGGGTGCTGTAGACGTGCGCGTCGCCGAGGGTGTGCACCAGCTCAC 8813 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 |||| || || || | | || |||| ||| | ||| ||||| ||||||| Sbjct 8814 CCGGACGCAGGCCAGTCGCCTTGGCGATCAAAATCGTCAAGAGCGAGTACGACGCGATGT 8873 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC-- 29823 | || ||||| || || |||||||| | ||| | ||| || ||| ||| || || || Sbjct 8874 TGAACGGCACGCCAAGACCCATGTCGCATGAGCGCTGATACAGCATGCAGGACAGTTCCT 8933 Query 29824 ---TCCGTC-GCTCACGTAAAACTGACACATGGCA--TGGCACGGAGGAAGGGCCAT 29874 || || | | ||||||||||||| || ||| ||||| || ||||| ||||| Sbjct 8934 TTGTCTGTGTGTTTACGTAAAACTGAC-CA-AGCAGGTGGCATGGCGGAAGTGCCAT 8988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406146701270038