Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2596 102 2e-16 seq5764 96.9 7e-15 seq2242 96.9 7e-15 seq1335 96.9 7e-15 seq1327 96.9 7e-15 seq1923 93.3 9e-14 >seq2596 Length=34106 Score = 102 bits (112), Expect = 2e-16 Identities = 232/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 |||||||| || | | | ||||||||||| || |||||||| | | || |||||| Sbjct 11519 GTGAAGATGTAACGTCCCGCGGCGTGGTCTTTGCCGCCCTGCAGGCGTGTACCGAACTGA 11578 Query 281802 CCCTCCG-GCA-ACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGA 281859 || ||| || | || | | | ||| ||||| || || | ||||| |||| | || Sbjct 11579 CCATCCTTGCGCAGAAGCGGG--ACGTTGTTGCTGCCAACAAAGTCCTGCGCCATGGCGA 11636 Query 281860 CGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAAC 281919 | || ||| | |||||| |||||||||||| |||||| || || | || || | Sbjct 11637 CAATGGTCTGCACAAGCGACTGCTCACCGTGGTGGTAGGCGGAATGCTCCGAGACGTAGC 11696 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAG-TTGCGTTTGAAAGCGCAATATAAT 281978 | || ||| ||||||| | | | || |||| ||||||||||| | | | | | Sbjct 11697 CGGAGAGCTGCACTACCTTGATGGA-GTTGACAAGGTTGCGTTTGAAGCAGGAGAAGAGT 11755 Query 281979 ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCA 282038 | |||||| || ||||||||| ||||||| | | |||||||||||| || || Sbjct 11756 ATTTTTCGCTGGCCAGGCTTGAAGCCATCAATGGCGCTCGGAATGCTGCGCTC----GCA 11811 Query 282039 TACCGC----GAGAACAAAATAAGTTCCTTGTCAATGAAGTC 282076 |||| ||||| | ||| | |||||||| | ||||| Sbjct 11812 GTCCGCGATGGAGAAGAGAATCAACTCCTTGTCCACAAAGTC 11853 >seq5764 Length=2049 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 1782 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 1841 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 1842 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 1901 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 1902 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 1961 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 1962 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 2004 >seq2242 Length=2422 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 706 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 765 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 766 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 825 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 826 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 885 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 886 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 928 >seq1335 Length=2956 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 2251 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 2192 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 2191 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 2132 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 2131 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 2072 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 2071 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 2029 >seq1327 Length=1320 Score = 96.9 bits (106), Expect = 7e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || || ||||||||||| || || ||| Sbjct 1053 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 1112 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || ||||| | |||| | || || ||||| ||| Sbjct 1113 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 1172 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 1173 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 1232 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 1233 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 1275 >seq1923 Length=5031 Score = 93.3 bits (102), Expect = 9e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 281731 GGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCG 281790 || |||| || || ||||| || | || |||||||| |||| |||| | | | Sbjct 1870 GGCTCAGCTTTGTAAAGATGTAGCGTGGTGCGGCGTGGTCGCTACCGAGCTGCTGACGTG 1929 Query 281791 ACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAG 281850 | || |||||||||||||||| | | ||||||||| |||| ||| | | | ||| | Sbjct 1930 AGCCGAACTGACCCTCCGGCACGAGCAGGTTAATGTTGTTGCCGCCGGTGAAGTTCTGTG 1989 Query 281851 CCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGC 281899 ||| || ||||| ||| ||||||| || ||||| |||||||| |||| Sbjct 1990 CCATCTTCACGATCGTCTCCTGAAGAGACACCTCGCCGTGGTGGAAGGC 2038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057741920791280